-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_15/scaffold_15_1870997-2082454

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.62646_t
Valid prediction for snap_scaffold_15-snap.393-T1
Valid prediction for GeneMark_model.62653_t
Valid prediction for GeneMark_model.62651_t
Valid prediction for Augustus_model.g24494.t1
Valid prediction for GeneMark_model.62631_t
Valid prediction for snap_scaffold_15-snap.408-T1
Valid prediction for GlimmerHMM_glimmerT_36453-T1
Valid prediction for GeneMark_model.62635_t
Valid prediction for GeneMark_model.62660_t
Valid prediction for GeneMark_model.62648_t
Valid prediction for Augustus_model.g24496.t1
Valid prediction for CodingQuarry_transcript_17876-T1
Valid prediction for GlimmerHMM_glimmerT_36424-T1
Valid prediction for GlimmerHMM_glimmerT_36420-T1
Valid prediction for GeneMark_model.62669_t
Valid prediction for snap_scaffold_15-snap.414-T1
Valid prediction for snap_scaffold_15-snap.424-T1
Valid prediction for Augustus_model.g24477.t1
Valid prediction for GeneMark_model.62667_t
Valid prediction for snap_scaffold_15-snap.398-T1
Valid prediction for snap_scaffold_15-snap.432-T1
Valid prediction for snap_scaffold_15-snap.425-T1
Valid prediction for snap_scaffold_15-snap.392-T1
Valid prediction for GlimmerHMM_glimmerT_36445-T1
Valid prediction for GeneMark_model.62659_t
Valid prediction for pasa_asmbl_13983.p1
Valid prediction for snap_scaffold_15-snap.403-T1
Valid prediction for snap_scaffold_15-snap.416-T1
Valid prediction for GeneMark_model.62650_t
Valid prediction for GeneMark_model.62673_t
Valid prediction for snap_scaffold_15-snap.404-T1
Valid prediction for Augustus_model.g24499.t1
Valid prediction for GlimmerHMM_glimmerT_36443-T1
Valid prediction for GeneMark_model.62642_t
Valid prediction for HiQ_model.g24487.t1
Valid prediction for snap_scaffold_15-snap.427-T1
Valid prediction for snap_scaffold_15-snap.402-T1
Valid prediction for snap_scaffold_15-snap.433-T1
Valid prediction for GeneMark_model.62637_t
Valid prediction for Augustus_model.g24493.t1
Valid prediction for GlimmerHMM_glimmerT_36416-T1
Valid prediction for GeneMark_model.62627_t
Valid prediction for snap_scaffold_15-snap.417-T1
Valid prediction for GlimmerHMM_glimmerT_36421-T1
Valid prediction for pasa_asmbl_13986.p1
Valid prediction for GlimmerHMM_glimmerT_36449-T1
Valid prediction for snap_scaffold_15-snap.388-T1
Valid prediction for GlimmerHMM_glimmerT_36417-T1
Valid prediction for GlimmerHMM_glimmerT_36456-T1
Valid prediction for Augustus_model.g24478.t1
Valid prediction for snap_scaffold_15-snap.429-T1
Valid prediction for GlimmerHMM_glimmerT_36438-T1
Valid prediction for GlimmerHMM_glimmerT_36447-T1
Valid prediction for HiQ_model.g24484.t1
Couldn't classify 146867, 146945
Sorry, prediction pasa_asmbl_14822.p1 fails validation.
(ATG)	 TG	145727-145767	GT	TGG
(GGC)	 AG	145893-145974	GT	AGG
(GAT)	 AG	146322-146395	GT	AGG
(GTT)	 AG	146682-146768	GT	CTG
(GTA)	 AG	146867-146945	AA	GCA
-recovered pasa_asmbl_14822.p1, initial, 145727, 145767
-recovered pasa_asmbl_14822.p1, internal, 145893, 145974
-recovered pasa_asmbl_14822.p1, internal, 146322, 146395
-recovered pasa_asmbl_14822.p1, internal, 146682, 146768
Valid prediction for snap_scaffold_15-snap.420-T1
Valid prediction for GeneMark_model.62656_t
Valid prediction for GeneMark_model.62644_t
Valid prediction for GeneMark_model.62632_t
Valid prediction for snap_scaffold_15-snap.406-T1
Valid prediction for CodingQuarry_transcript_17875-T1
Valid prediction for snap_scaffold_15-snap.413-T1
Valid prediction for CodingQuarry_transcript_17877-T1
Valid prediction for GeneMark_model.62671_t
Valid prediction for GlimmerHMM_glimmerT_36432-T1
Valid prediction for snap_scaffold_15-snap.386-T1
Valid prediction for GeneMark_model.62629_t
Valid prediction for GlimmerHMM_glimmerT_36457-T1
Valid prediction for snap_scaffold_15-snap.395-T1
Valid prediction for GeneMark_model.62661_t
Valid prediction for Augustus_model.g24481.t1
Couldn't classify 147444, 147532
Sorry, prediction pasa_asmbl_13989.p1 fails validation.
(TTT)	 AG	147444-147532	GT	AAG
(GCC)	 AG	147634-147700	GT	AAG
(ATG)	 AG	147811-147960	AG	GAA
-recovered pasa_asmbl_13989.p1, terminal, 147811, 147960
-recovered pasa_asmbl_13989.p1, internal, 147444, 147532
-recovered pasa_asmbl_13989.p1, internal, 147634, 147700
Valid prediction for GeneMark_model.62663_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_36423-T1
Valid prediction for GeneMark_model.62647_t
Valid prediction for Augustus_model.g24491.t1
Valid prediction for GlimmerHMM_glimmerT_36430-T1
Valid prediction for GlimmerHMM_glimmerT_36429-T1
Valid prediction for GeneMark_model.62638_t
Valid prediction for GlimmerHMM_glimmerT_36434-T1
Valid prediction for GlimmerHMM_glimmerT_36448-T1
Valid prediction for GlimmerHMM_glimmerT_36419-T1
Valid prediction for GeneMark_model.62630_t
Valid prediction for snap_scaffold_15-snap.430-T1
Valid prediction for snap_scaffold_15-snap.418-T1
Valid prediction for HiQ_model.g24489.t1
Valid prediction for GlimmerHMM_glimmerT_36451-T1
Valid prediction for GlimmerHMM_glimmerT_36439-T1
Valid prediction for GeneMark_model.62657_t
Valid prediction for snap_scaffold_15-snap.397-T1
Valid prediction for GlimmerHMM_glimmerT_36440-T1
Valid prediction for pasa_asmbl_14993.p1
Valid prediction for HiQ_model.g24485.t1
Valid prediction for GeneMark_model.62624_t
Valid prediction for GlimmerHMM_glimmerT_36433-T1
Valid prediction for snap_scaffold_15-snap.407-T1
Valid prediction for GeneMark_model.62668_t
Valid prediction for GeneMark_model.62641_t
Couldn't classify 141413, 141543
Sorry, prediction Augustus_model.g24483.t1 fails validation.
(ATG)	 CA	122174-122317	GT	AGG
(GCC)	 AG	122404-122538	GT	CTG
(TTT)	 AG	122665-122749	GT	AGG
(GAA)	 AG	123598-123761	GT	AGG
(GTC)	 AG	123880-124056	GT	AGG
(ATG)	 AG	124151-124264	GT	CGG
(GTC)	 AG	124346-124453	GT	AGG
(GTT)	 AG	124542-124643	GT	AGG
(GAC)	 AG	124745-124885	GT	AGG
(ATA)	 AG	125074-125271	GT	AGG
(AAC)	 AG	125352-125428	GT	AGG
(ATT)	 AG	125547-125646	GT	AGG
(CTG)	 AG	125778-125897	GT	AGG
(AAA)	 AG	126005-126140	GT	TGG
(GAA)	 AG	126686-126834	GT	AGG
(GTG)	 AG	127334-127450	GT	AGG
(GTG)	 AG	127552-127671	GT	AGG
(ATA)	 AG	127786-127927	GT	TGG
(AAA)	 AG	128024-128142	GT	AGG
(GAG)	 AG	128388-128494	GT	ACG
(ACT)	 AG	128589-128679	GT	TGG
(GTT)	 AG	128780-128909	GT	ATG
(CCA)	 AG	129052-129221	GT	AGG
(ATG)	 AG	129548-129772	GT	AGG
(GAG)	 AG	129977-130081	GT	CGG
(AGA)	 AG	130191-130304	GT	AGG
(GAA)	 AG	130463-130525	GT	AGG
(GCC)	 AG	130650-130750	GT	AAG
(GAA)	 AG	130844-130981	GT	AGG
(GTG)	 AG	131171-131411	GT	AGG
(GAT)	 AG	131510-131691	GT	GGG
(ATA)	 AG	131810-131963	GT	AAG
(GAA)	 AG	132054-132217	GT	GGG
(GTA)	 AG	132538-132640	GT	AGG
(CTG)	 AG	133002-133163	GT	AGG
(GTT)	 AG	133279-133503	GT	TAG
(GTA)	 AG	133601-133773	GT	AGG
(GTG)	 AG	135827-136005	GT	AGG
(GAC)	 AG	136291-136478	GT	TGG
(AAC)	 AG	136566-136652	GT	AGG
(ATC)	 AG	136892-136999	GT	AGG
(GTC)	 AG	137314-137448	GT	TGG
(GTG)	 AG	137525-137686	GT	AGG
(CTG)	 AG	137793-138039	GT	AGG
(GGG)	 AG	138172-138413	GT	AGG
(TCT)	 AG	138799-139030	GT	GGG
(GTC)	 AG	139142-139284	GT	AGG
(GCT)	 AG	139368-139502	GT	AGG
(CGT)	 AG	139763-139885	GT	AGG
(ATC)	 AG	139978-140191	GT	TGG
(GCG)	 AG	140433-140542	GT	AGG
(ACG)	 AG	140652-140815	GT	AGG
(GTT)	 AG	140902-141094	GT	TGG
(ATC)	 AG	141198-141320	GT	AGG
(ATC)	 AG	141413-141543	GT	AGG
-recovered Augustus_model.g24483.t1, initial, 122174, 122317
-recovered Augustus_model.g24483.t1, initial, 124151, 124264
-recovered Augustus_model.g24483.t1, initial, 129548, 129772
-recovered Augustus_model.g24483.t1, terminal, 122665, 122749
add_exon() Sorry, Augustus_model.g24483.t1 140652-140815-terminal-2 is invalid.
-recovered Augustus_model.g24483.t1, terminal, 140652, 140815
-recovered Augustus_model.g24483.t1, internal, 122404, 122538
-recovered Augustus_model.g24483.t1, internal, 122665, 122749
-recovered Augustus_model.g24483.t1, internal, 123598, 123761
-recovered Augustus_model.g24483.t1, internal, 123880, 124056
-recovered Augustus_model.g24483.t1, internal, 124151, 124264
-recovered Augustus_model.g24483.t1, internal, 124346, 124453
-recovered Augustus_model.g24483.t1, internal, 124542, 124643
-recovered Augustus_model.g24483.t1, internal, 124745, 124885
-recovered Augustus_model.g24483.t1, internal, 125074, 125271
-recovered Augustus_model.g24483.t1, internal, 125352, 125428
-recovered Augustus_model.g24483.t1, internal, 125547, 125646
-recovered Augustus_model.g24483.t1, internal, 125778, 125897
-recovered Augustus_model.g24483.t1, internal, 126005, 126140
-recovered Augustus_model.g24483.t1, internal, 126686, 126834
-recovered Augustus_model.g24483.t1, internal, 127334, 127450
-recovered Augustus_model.g24483.t1, internal, 127552, 127671
-recovered Augustus_model.g24483.t1, internal, 127786, 127927
-recovered Augustus_model.g24483.t1, internal, 128024, 128142
-recovered Augustus_model.g24483.t1, internal, 128388, 128494
-recovered Augustus_model.g24483.t1, internal, 128589, 128679
-recovered Augustus_model.g24483.t1, internal, 128780, 128909
-recovered Augustus_model.g24483.t1, internal, 129052, 129221
-recovered Augustus_model.g24483.t1, internal, 129548, 129772
-recovered Augustus_model.g24483.t1, internal, 129977, 130081
-recovered Augustus_model.g24483.t1, internal, 130191, 130304
-recovered Augustus_model.g24483.t1, internal, 130463, 130525
-recovered Augustus_model.g24483.t1, internal, 130650, 130750
-recovered Augustus_model.g24483.t1, internal, 130844, 130981
-recovered Augustus_model.g24483.t1, internal, 131171, 131411
-recovered Augustus_model.g24483.t1, internal, 131510, 131691
-recovered Augustus_model.g24483.t1, internal, 131810, 131963
-recovered Augustus_model.g24483.t1, internal, 132054, 132217
-recovered Augustus_model.g24483.t1, internal, 132538, 132640
-recovered Augustus_model.g24483.t1, internal, 133002, 133163
-recovered Augustus_model.g24483.t1, internal, 133279, 133503
-recovered Augustus_model.g24483.t1, internal, 133601, 133773
-recovered Augustus_model.g24483.t1, internal, 135827, 136005
-recovered Augustus_model.g24483.t1, internal, 136291, 136478
-recovered Augustus_model.g24483.t1, internal, 136566, 136652
-recovered Augustus_model.g24483.t1, internal, 136892, 136999
-recovered Augustus_model.g24483.t1, internal, 137314, 137448
-recovered Augustus_model.g24483.t1, internal, 137525, 137686
-recovered Augustus_model.g24483.t1, internal, 137793, 138039
-recovered Augustus_model.g24483.t1, internal, 138172, 138413
-recovered Augustus_model.g24483.t1, internal, 138799, 139030
-recovered Augustus_model.g24483.t1, internal, 139142, 139284
-recovered Augustus_model.g24483.t1, internal, 139368, 139502
-recovered Augustus_model.g24483.t1, internal, 139763, 139885
-recovered Augustus_model.g24483.t1, internal, 139978, 140191
-recovered Augustus_model.g24483.t1, internal, 140433, 140542
-recovered Augustus_model.g24483.t1, internal, 140652, 140815
-recovered Augustus_model.g24483.t1, internal, 140902, 141094
-recovered Augustus_model.g24483.t1, internal, 141198, 141320
-recovered Augustus_model.g24483.t1, internal, 141413, 141543
Valid prediction for GeneMark_model.62649_t
Valid prediction for snap_scaffold_15-snap.419-T1
Couldn't classify 11078, 11078
Sorry, prediction pasa_asmbl_15000.p1 fails validation.
(ATG)	 AT	4525-4556	GT	TAG
(CCT)	 AG	4970-5076	GT	TGG
(TCA)	 AG	5800-5884	GT	AGG
(ATA)	 AG	5971-6040	GT	AGG
(GAG)	 AG	6199-6250	GT	GTG
(TGA)	 AG	7549-7604	GT	ATG
(ATA)	 AG	8175-8210	GT	TGG
(GAT)	 AG	8325-8416	GT	TGG
(GAG)	 AG	8889-8956	GT	TGG
(CTT)	 AG	9033-9112	GT	AAG
(ATC)	 AG	10127-10245	GT	AGG
(TGA)	 AG	10502-10555	GT	TAG
(GGA)	 AG	11078-11078	GA	GGG
-recovered pasa_asmbl_15000.p1, initial, 4525, 4556
-recovered pasa_asmbl_15000.p1, internal, 4970, 5076
-recovered pasa_asmbl_15000.p1, internal, 5800, 5884
-recovered pasa_asmbl_15000.p1, internal, 5971, 6040
-recovered pasa_asmbl_15000.p1, internal, 6199, 6250
-recovered pasa_asmbl_15000.p1, internal, 7549, 7604
-recovered pasa_asmbl_15000.p1, internal, 8175, 8210
-recovered pasa_asmbl_15000.p1, internal, 8325, 8416
-recovered pasa_asmbl_15000.p1, internal, 8889, 8956
-recovered pasa_asmbl_15000.p1, internal, 9033, 9112
-recovered pasa_asmbl_15000.p1, internal, 10127, 10245
-recovered pasa_asmbl_15000.p1, internal, 10502, 10555
Valid prediction for HiQ_model.g24498.t1
Valid prediction for GlimmerHMM_glimmerT_36427-T1
Valid prediction for GeneMark_model.62639_t
Valid prediction for GeneMark_model.62655_t
Valid prediction for GlimmerHMM_glimmerT_36437-T1
Valid prediction for snap_scaffold_15-snap.411-T1
Valid prediction for snap_scaffold_15-snap.412-T1
Couldn't classify 11078, 11078
Sorry, prediction CodingQuarry_transcript_17881-T1 fails validation.
(ATG)	 AT	4525-4556	GT	TAG
(CCT)	 AG	4970-5076	GT	TGG
(TCA)	 AG	5800-5884	GT	AGG
(ATA)	 AG	5971-6040	GT	AGG
(GAG)	 AG	6199-6250	GT	GTG
(TGA)	 AG	7549-7604	GT	ATG
(ATA)	 AG	8175-8210	GT	TGG
(GAT)	 AG	8325-8416	GT	TGG
(GAG)	 AG	8889-8956	GT	TGG
(CTT)	 AG	9033-9112	GT	AAG
(ATC)	 AG	10127-10245	GT	AGG
(TGA)	 AG	10502-10555	GT	TAG
(GGA)	 AG	11078-11078	GA	GGG
-recovered CodingQuarry_transcript_17881-T1, initial, 4525, 4556
-recovered CodingQuarry_transcript_17881-T1, internal, 4970, 5076
-recovered CodingQuarry_transcript_17881-T1, internal, 5800, 5884
-recovered CodingQuarry_transcript_17881-T1, internal, 5971, 6040
-recovered CodingQuarry_transcript_17881-T1, internal, 6199, 6250
-recovered CodingQuarry_transcript_17881-T1, internal, 7549, 7604
-recovered CodingQuarry_transcript_17881-T1, internal, 8175, 8210
-recovered CodingQuarry_transcript_17881-T1, internal, 8325, 8416
-recovered CodingQuarry_transcript_17881-T1, internal, 8889, 8956
-recovered CodingQuarry_transcript_17881-T1, internal, 9033, 9112
-recovered CodingQuarry_transcript_17881-T1, internal, 10127, 10245
-recovered CodingQuarry_transcript_17881-T1, internal, 10502, 10555
Valid prediction for GeneMark_model.62633_t
Valid prediction for GlimmerHMM_glimmerT_36431-T1
Valid prediction for HiQ_model.g24479.t1
Valid prediction for GeneMark_model.62670_t
Valid prediction for GlimmerHMM_glimmerT_36446-T1
Valid prediction for GlimmerHMM_glimmerT_36450-T1
Valid prediction for Augustus_model.g24497.t1
Valid prediction for GeneMark_model.62634_t
Valid prediction for CodingQuarry_transcript_17880-T1
Valid prediction for GlimmerHMM_glimmerT_36452-T1
Valid prediction for snap_scaffold_15-snap.396-T1
Valid prediction for GeneMark_model.62654_t
Valid prediction for GlimmerHMM_glimmerT_36428-T1
Valid prediction for Augustus_model.g24492.t1
Valid prediction for snap_scaffold_15-snap.389-T1
Valid prediction for GeneMark_model.62640_t
Valid prediction for snap_scaffold_15-snap.401-T1
Couldn't classify 91751, 92056
Sorry, prediction pasa_asmbl_14989.p1 fails validation.
(CCT)	 TC	91751-92056	TG	GAT
Valid prediction for GlimmerHMM_glimmerT_36454-T1
Valid prediction for Augustus_model.g24480.t1
Valid prediction for GlimmerHMM_glimmerT_36426-T1
Valid prediction for snap_scaffold_15-snap.431-T1
Valid prediction for pasa_asmbl_14990.p1
Valid prediction for GeneMark_model.62658_t
Couldn't classify 78211, 78574
Sorry, prediction pasa_asmbl_14991.p1 fails validation.
(ATG)	 TA	77706-77890	GT	AGG
(GGC)	 AG	78211-78574	GT	AGG
-recovered pasa_asmbl_14991.p1, initial, 77706, 77890
-recovered pasa_asmbl_14991.p1, internal, 78211, 78574
Valid prediction for GlimmerHMM_glimmerT_36436-T1
Valid prediction for GeneMark_model.62672_t
Valid prediction for snap_scaffold_15-snap.415-T1
Valid prediction for Augustus_model.g24482.t1
Valid prediction for snap_scaffold_15-snap.409-T1
Valid prediction for snap_scaffold_15-snap.426-T1
Valid prediction for pasa_asmbl_14987.p1
Valid prediction for GeneMark_model.62652_t
Valid prediction for GeneMark_model.62662_t
Valid prediction for GeneMark_model.62643_t
Valid prediction for GlimmerHMM_glimmerT_36425-T1
Valid prediction for GeneMark_model.62636_t
Valid prediction for snap_scaffold_15-snap.387-T1
Valid prediction for snap_scaffold_15-snap.428-T1
Valid prediction for snap_scaffold_15-snap.391-T1
Valid prediction for GeneMark_model.62626_t
Valid prediction for snap_scaffold_15-snap.405-T1
Valid prediction for GlimmerHMM_glimmerT_36441-T1
Valid prediction for snap_scaffold_15-snap.394-T1
Couldn't classify 11061, 11061
Sorry, prediction CodingQuarry_transcript_17882-T1 fails validation.
(ATG)	 AT	4525-4556	GT	TAG
(CCT)	 AG	4970-5076	GT	TGG
(TCA)	 AG	5800-5884	GT	AGG
(ATA)	 AG	5971-6040	GT	AGG
(GAG)	 AG	6199-6250	GT	GTG
(TGA)	 AG	7549-7604	GT	ATG
(ATA)	 AG	8175-8210	GT	TGG
(GAT)	 AG	8325-8416	GT	TGG
(GAG)	 AG	8889-8956	GT	TGG
(CTT)	 AG	9033-9112	GT	AAG
(ATC)	 AG	10127-10245	GT	AGG
(TGA)	 AG	10502-10555	GT	TAG
(GTG)	 AG	11061-11061	TG	GGT
-recovered CodingQuarry_transcript_17882-T1, initial, 4525, 4556
-recovered CodingQuarry_transcript_17882-T1, internal, 4970, 5076
-recovered CodingQuarry_transcript_17882-T1, internal, 5800, 5884
-recovered CodingQuarry_transcript_17882-T1, internal, 5971, 6040
-recovered CodingQuarry_transcript_17882-T1, internal, 6199, 6250
-recovered CodingQuarry_transcript_17882-T1, internal, 7549, 7604
-recovered CodingQuarry_transcript_17882-T1, internal, 8175, 8210
-recovered CodingQuarry_transcript_17882-T1, internal, 8325, 8416
-recovered CodingQuarry_transcript_17882-T1, internal, 8889, 8956
-recovered CodingQuarry_transcript_17882-T1, internal, 9033, 9112
-recovered CodingQuarry_transcript_17882-T1, internal, 10127, 10245
-recovered CodingQuarry_transcript_17882-T1, internal, 10502, 10555
Valid prediction for CodingQuarry_transcript_17878-T1
Valid prediction for GlimmerHMM_glimmerT_36418-T1
Valid prediction for GeneMark_model.62666_t
Valid prediction for snap_scaffold_15-snap.399-T1
Valid prediction for snap_scaffold_15-snap.410-T1
Valid prediction for snap_scaffold_15-snap.421-T1
Valid prediction for Augustus_model.g24488.t1
Valid prediction for Augustus_model.g24495.t1
Couldn't classify 186926, 187090
Sorry, prediction pasa_asmbl_15863.p1 fails validation.
(ACT)	 CT	186926-187090	GT	AGG
(CAT)	 AG	188212-189240	GC	AGG
-recovered pasa_asmbl_15863.p1, terminal, 188212, 189240
-recovered pasa_asmbl_15863.p1, internal, 188212, 189240
Valid prediction for snap_scaffold_15-snap.422-T1
Couldn't classify 67955, 68001
Sorry, prediction pasa_asmbl_14995.p1 fails validation.
(AAG)	 TA	67955-68001	GT	TGG
(GGC)	 AG	68125-68206	GT	AGG
(GAT)	 AG	68343-68416	GT	AGG
(GTT)	 AG	68703-68789	GT	CTG
(GTA)	 AG	68888-69041	GC	GAG
-recovered pasa_asmbl_14995.p1, terminal, 68888, 69041
-recovered pasa_asmbl_14995.p1, internal, 68125, 68206
-recovered pasa_asmbl_14995.p1, internal, 68343, 68416
-recovered pasa_asmbl_14995.p1, internal, 68703, 68789
-recovered pasa_asmbl_14995.p1, internal, 68888, 69041
Valid prediction for GlimmerHMM_glimmerT_36415-T1
Valid prediction for CodingQuarry_transcript_17879-T1
Valid prediction for GlimmerHMM_glimmerT_36444-T1
Valid prediction for GlimmerHMM_glimmerT_36435-T1
Valid prediction for snap_scaffold_15-snap.423-T1
Valid prediction for snap_scaffold_15-snap.390-T1
Valid prediction for GlimmerHMM_glimmerT_36422-T1
Valid prediction for GlimmerHMM_glimmerT_36442-T1
Valid prediction for snap_scaffold_15-snap.400-T1
Valid prediction for Augustus_model.g24490.t1
Valid prediction for GeneMark_model.62628_t
Valid prediction for GeneMark_model.62664_t
Valid prediction for GlimmerHMM_glimmerT_36455-T1
Valid prediction for pasa_asmbl_14992.p1
Valid prediction for GeneMark_model.62645_t
Valid prediction for Augustus_model.g24486.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5587, rend_intergenic: 1757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19517, rend_intergenic: 14000  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30417, rend_intergenic: 25232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36821, rend_intergenic: 34948  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43515, rend_intergenic: 39753  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52662, rend_intergenic: 44990  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88290, rend_intergenic: 67973  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94067, rend_intergenic: 91278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100535, rend_intergenic: 95253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112747, rend_intergenic: 105199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116459, rend_intergenic: 113367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122697, rend_intergenic: 120588  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133753, rend_intergenic: 129766  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172150, rend_intergenic: 150269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206437, rend_intergenic: 202589  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 170423, rend_intergenic: 170420  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 211458
-exon list size: 948


building trellis

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-found 41 predictions from path traversal
Error with prediction: snap lend_intergenic: 5587, rend_intergenic: 1757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19517, rend_intergenic: 14000  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30417, rend_intergenic: 25232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36821, rend_intergenic: 34948  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43515, rend_intergenic: 39753  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52662, rend_intergenic: 44990  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88290, rend_intergenic: 67973  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94067, rend_intergenic: 91278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100535, rend_intergenic: 95253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112747, rend_intergenic: 105199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116459, rend_intergenic: 113367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122697, rend_intergenic: 120588  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133753, rend_intergenic: 129766  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172150, rend_intergenic: 150269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206437, rend_intergenic: 202589  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 170423, rend_intergenic: 170420  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 34 predictions persist after filtering for low support