-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_15/scaffold_15_15935447-16110266

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_15-snap.3169-T1
Valid prediction for GeneMark_model.65859_t
Valid prediction for snap_scaffold_15-snap.3174-T1
Valid prediction for snap_scaffold_15-snap.3177-T1
Valid prediction for GeneMark_model.65845_t
Valid prediction for GeneMark_model.65840_t
Valid prediction for GlimmerHMM_glimmerT_38404-T1
Valid prediction for GlimmerHMM_glimmerT_38389-T1
Valid prediction for GeneMark_model.65863_t
Valid prediction for GeneMark_model.65844_t
Valid prediction for GeneMark_model.65854_t
Valid prediction for GeneMark_model.65830_t
Valid prediction for GeneMark_model.65838_t
Valid prediction for snap_scaffold_15-snap.3167-T1
Valid prediction for GeneMark_model.65834_t
Valid prediction for GeneMark_model.65836_t
Valid prediction for GeneMark_model.65855_t
Valid prediction for Augustus_model.g25778.t1
Valid prediction for GlimmerHMM_glimmerT_38396-T1
Valid prediction for GlimmerHMM_glimmerT_38407-T1
Valid prediction for GlimmerHMM_glimmerT_38395-T1
Valid prediction for snap_scaffold_15-snap.3182-T1
Valid prediction for snap_scaffold_15-snap.3163-T1
Valid prediction for snap_scaffold_15-snap.3178-T1
Valid prediction for snap_scaffold_15-snap.3170-T1
Valid prediction for GlimmerHMM_glimmerT_38398-T1
Valid prediction for GeneMark_model.65846_t
Valid prediction for snap_scaffold_15-snap.3187-T1
Valid prediction for GeneMark_model.65833_t
Valid prediction for GeneMark_model.65842_t
Valid prediction for GlimmerHMM_glimmerT_38393-T1
Valid prediction for GeneMark_model.65865_t
Valid prediction for snap_scaffold_15-snap.3166-T1
Valid prediction for GeneMark_model.65847_t
Valid prediction for GlimmerHMM_glimmerT_38399-T1
Valid prediction for GeneMark_model.65861_t
Valid prediction for snap_scaffold_15-snap.3186-T1
Valid prediction for GeneMark_model.65856_t
Valid prediction for GeneMark_model.65852_t
Couldn't classify 142857, 143288
Sorry, prediction pasa_asmbl_14801.p1 fails validation.
(CAT)	 CT	142857-143288	CC	AGC
Valid prediction for GlimmerHMM_glimmerT_38392-T1
Valid prediction for snap_scaffold_15-snap.3181-T1
Valid prediction for GlimmerHMM_glimmerT_38397-T1
Valid prediction for snap_scaffold_15-snap.3176-T1
Valid prediction for GeneMark_model.65849_t
Valid prediction for GeneMark_model.65851_t
Valid prediction for GlimmerHMM_glimmerT_38401-T1
Valid prediction for GlimmerHMM_glimmerT_38400-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_15-snap.3172-T1
Valid prediction for GeneMark_model.65866_t
Valid prediction for snap_scaffold_15-snap.3161-T1
Valid prediction for snap_scaffold_15-snap.3171-T1
Valid prediction for GeneMark_model.65828_t
Valid prediction for snap_scaffold_15-snap.3165-T1
Valid prediction for GlimmerHMM_glimmerT_38405-T1
Valid prediction for snap_scaffold_15-snap.3180-T1
Valid prediction for GeneMark_model.65839_t
Valid prediction for GlimmerHMM_glimmerT_38386-T1
Valid prediction for GeneMark_model.65831_t
Valid prediction for GlimmerHMM_glimmerT_38387-T1
Valid prediction for Augustus_model.g25776.t1
Valid prediction for GlimmerHMM_glimmerT_38388-T1
Valid prediction for GeneMark_model.65848_t
Valid prediction for GlimmerHMM_glimmerT_38406-T1
Valid prediction for snap_scaffold_15-snap.3179-T1
Valid prediction for snap_scaffold_15-snap.3168-T1
Valid prediction for GeneMark_model.65868_t
Valid prediction for snap_scaffold_15-snap.3159-T1
Valid prediction for GeneMark_model.65850_t
Valid prediction for GeneMark_model.65829_t
Valid prediction for snap_scaffold_15-snap.3175-T1
Valid prediction for GeneMark_model.65841_t
Valid prediction for snap_scaffold_15-snap.3162-T1
Valid prediction for snap_scaffold_15-snap.3184-T1
Valid prediction for Augustus_model.g25777.t1
Valid prediction for snap_scaffold_15-snap.3164-T1
Valid prediction for GeneMark_model.65843_t
Valid prediction for GeneMark_model.65864_t
Valid prediction for GeneMark_model.65853_t
Valid prediction for GeneMark_model.65832_t
Valid prediction for GlimmerHMM_glimmerT_38391-T1
Valid prediction for GeneMark_model.65858_t
Valid prediction for GlimmerHMM_glimmerT_38394-T1
Valid prediction for GeneMark_model.65835_t
Valid prediction for GeneMark_model.65867_t
Valid prediction for GeneMark_model.65862_t
Valid prediction for snap_scaffold_15-snap.3185-T1
Valid prediction for snap_scaffold_15-snap.3173-T1
Valid prediction for GlimmerHMM_glimmerT_38402-T1
Valid prediction for snap_scaffold_15-snap.3183-T1
Valid prediction for snap_scaffold_15-snap.3160-T1
Valid prediction for GeneMark_model.65857_t
Valid prediction for GlimmerHMM_glimmerT_38403-T1
Valid prediction for GlimmerHMM_glimmerT_38390-T1
Valid prediction for GeneMark_model.65837_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 31318, rend_intergenic: 27038  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36614, rend_intergenic: 32650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54597, rend_intergenic: 42890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58324, rend_intergenic: 55651  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157508, rend_intergenic: 155902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 174820
-exon list size: 365


building trellis

0.3    
0.5    
0.8    
1.1    
1.4    
1.6    
1.9    
2.2    
2.5    
2.7    
3.0    
3.3    
3.5    
3.8    
4.1    
4.4    
4.6    
4.9    
5.2    
5.4    
5.7    
6.0    
6.3    
6.5    
6.8    
7.1    
7.4    
7.6    
7.9    
8.2    
8.4    
8.7    
9.0    
9.3    
9.5    
9.8    
10.1    
10.4    
10.6    
10.9    
11.2    
11.4    
11.7    
12.0    
12.3    
12.5    
12.8    
13.1    
13.4    
13.6    
13.9    
14.2    
14.4    
14.7    
15.0    
15.3    
15.5    
15.8    
16.1    
16.3    
16.6    
16.9    
17.2    
17.4    
17.7    
18.0    
18.3    
18.5    
18.8    
19.1    
19.3    
19.6    
19.9    
20.2    
20.4    
20.7    
21.0    
21.3    
21.5    
21.8    
22.1    
22.3    
22.6    
22.9    
23.2    
23.4    
23.7    
24.0    
24.3    
24.5    
24.8    
25.1    
25.3    
25.6    
25.9    
26.2    
26.4    
26.7    
27.0    
27.2    
27.5    
27.8    
28.1    
28.3    
28.6    
28.9    
29.2    
29.4    
29.7    
30.0    
30.2    
30.5    
30.8    
31.1    
31.3    
31.6    
31.9    
32.2    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.1    
34.3    
34.6    
34.9    
35.1    
35.4    
35.7    
36.0    
36.2    
36.5    
36.8    
37.1    
37.3    
37.6    
37.9    
38.1    
38.4    
38.7    
39.0    
39.2    
39.5    
39.8    
40.1    
40.3    
40.6    
40.9    
41.1    
41.4    
41.7    
42.0    
42.2    
42.5    
42.8    
43.1    
43.3    
43.6    
43.9    
44.1    
44.4    
44.7    
45.0    
45.2    
45.5    
45.8    
46.0    
46.3    
46.6    
46.9    
47.1    
47.4    
47.7    
48.0    
48.2    
48.5    
48.8    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.2    
51.5    
51.8    
52.0    
52.3    
52.6    
52.9    
53.1    
53.4    
53.7    
54.0    
54.2    
54.5    
54.8    
55.0    
55.3    
55.6    
55.9    
56.1    
56.4    
56.7    
56.9    
57.2    
57.5    
57.8    
58.0    
58.3    
58.6    
58.9    
59.1    
59.4    
59.7    
59.9    
60.2    
60.5    
60.8    
61.0    
61.3    
61.6    
61.9    
62.1    
62.4    
62.7    
62.9    
63.2    
63.5    
63.8    
64.0    
64.3    
64.6    
64.9    
65.1    
65.4    
65.7    
65.9    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.8    
68.1    
68.4    
68.7    
68.9    
69.2    
69.5    
69.8    
70.0    
70.3    
70.6    
70.8    
71.1    
71.4    
71.7    
71.9    
72.2    
72.5    
72.8    
73.0    
73.3    
73.6    
73.8    
74.1    
74.4    
74.7    
74.9    
75.2    
75.5    
75.7    
76.0    
76.3    
76.6    
76.8    
77.1    
77.4    
77.7    
77.9    
78.2    
78.5    
78.7    
79.0    
79.3    
79.6    
79.8    
80.1    
80.4    
80.7    
80.9    
81.2    
81.5    
81.7    
82.0    
82.3    
82.6    
82.8    
83.1    
83.4    
83.7    
83.9    
84.2    
84.5    
84.7    
85.0    
85.3    
85.6    
85.8    
86.1    
86.4    
86.6    
86.9    
87.2    
87.5    
87.7    
88.0    
88.3    
88.6    
88.8    
89.1    
89.4    
89.6    
89.9    
90.2    
90.5    
90.7    
91.0    
91.3    
91.6    
91.8    
92.1    
92.4    
92.6    
92.9    
93.2    
93.5    
93.7    
94.0    
94.3    
94.6    
94.8    
95.1    
95.4    
95.6    
95.9    
96.2    
96.5    
96.7    
97.0    
97.3    
97.5    
97.8    
98.1    
98.4    
98.6    
98.9    
99.2    
99.5    
99.7    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 31318, rend_intergenic: 27038  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36614, rend_intergenic: 32650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54597, rend_intergenic: 42890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58324, rend_intergenic: 55651  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157508, rend_intergenic: 155902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support