-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_15/scaffold_15_13772875-13967844

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g25550.t1
Valid prediction for GeneMark_model.65462_t
Valid prediction for snap_scaffold_15-snap.2756-T1
Valid prediction for Augustus_model.g25545.t1
Valid prediction for GeneMark_model.65491_t
Valid prediction for GeneMark_model.65452_t
Valid prediction for Augustus_model.g25563.t1
Valid prediction for GeneMark_model.65467_t
Couldn't classify 141942, 142700
Sorry, prediction pasa_asmbl_14603.p1 fails validation.
(AGC)	 GC	141942-142700	CC	AGC
Valid prediction for GlimmerHMM_glimmerT_38112-T1
Valid prediction for snap_scaffold_15-snap.2771-T1
Valid prediction for GeneMark_model.65489_t
Valid prediction for GeneMark_model.65482_t
Valid prediction for GlimmerHMM_glimmerT_38109-T1
Valid prediction for GeneMark_model.65460_t
Valid prediction for snap_scaffold_15-snap.2768-T1
Valid prediction for GeneMark_model.65486_t
Valid prediction for snap_scaffold_15-snap.2748-T1
Valid prediction for GeneMark_model.65501_t
Valid prediction for GeneMark_model.65456_t
Valid prediction for GeneMark_model.65473_t
Valid prediction for snap_scaffold_15-snap.2766-T1
Valid prediction for GlimmerHMM_glimmerT_38106-T1
Valid prediction for Augustus_model.g25561.t1
Valid prediction for GlimmerHMM_glimmerT_38093-T1
Valid prediction for snap_scaffold_15-snap.2759-T1
Valid prediction for Augustus_model.g25555.t1
Valid prediction for snap_scaffold_15-snap.2757-T1
Valid prediction for GlimmerHMM_glimmerT_38114-T1
Valid prediction for snap_scaffold_15-snap.2761-T1
Valid prediction for snap_scaffold_15-snap.2754-T1
Valid prediction for Augustus_model.g25559.t1
Valid prediction for snap_scaffold_15-snap.2750-T1
Valid prediction for snap_scaffold_15-snap.2776-T1
Valid prediction for GlimmerHMM_glimmerT_38111-T1
Valid prediction for GeneMark_model.65471_t
Valid prediction for Augustus_model.g25556.t1
Valid prediction for GeneMark_model.65481_t
Valid prediction for GeneMark_model.65499_t
Valid prediction for snap_scaffold_15-snap.2752-T1
Valid prediction for GeneMark_model.65450_t
Valid prediction for snap_scaffold_15-snap.2783-T1
Valid prediction for Augustus_model.g25557.t1
Valid prediction for GeneMark_model.65495_t
Valid prediction for GlimmerHMM_glimmerT_38103-T1
Valid prediction for Augustus_model.g25547.t1
Valid prediction for snap_scaffold_15-snap.2758-T1
Valid prediction for GeneMark_model.65458_t
Valid prediction for GeneMark_model.65454_t
Valid prediction for snap_scaffold_15-snap.2769-T1
Valid prediction for GeneMark_model.65493_t
Valid prediction for GeneMark_model.65479_t
Valid prediction for snap_scaffold_15-snap.2773-T1
Valid prediction for GeneMark_model.65477_t
Valid prediction for snap_scaffold_15-snap.2775-T1
Valid prediction for GlimmerHMM_glimmerT_38105-T1
Valid prediction for snap_scaffold_15-snap.2781-T1
Valid prediction for Augustus_model.g25554.t1
Valid prediction for GeneMark_model.65469_t
Valid prediction for GeneMark_model.65505_t
Valid prediction for snap_scaffold_15-snap.2767-T1
Valid prediction for GeneMark_model.65465_t
Valid prediction for snap_scaffold_15-snap.2762-T1
Valid prediction for GeneMark_model.65503_t
Couldn't classify 154129, 154178
Sorry, prediction pasa_asmbl_14604.p1 fails validation.
(CAG)	 GC	154129-154178	GT	GCG
(TCT)	 AG	154370-154488	GT	TGG
(CTG)	 AG	154816-154978	GT	AAG
(AGA)	 AG	155071-155195	GT	AGG
(ATG)	 AG	155428-155587	GT	GCG
(CGA)	 AG	155860-156035	GT	AGG
(ACT)	 AG	156315-156463	GT	ACG
(AGC)	 AG	156659-156752	GT	TGG
(GCC)	 AG	156983-157094	GT	AAG
(CAC)	 AG	157183-157257	GT	AGG
(GTC)	 AG	157603-157743	GT	AGG
(TCC)	 AG	157880-157986	GT	AGG
(GTA)	 AG	158165-158310	GT	AGG
(GGT)	 AG	158614-158775	CT	AGC
add_exon() Sorry, pasa_asmbl_14604.p1 155428-155587-initial-1 is invalid.
-recovered pasa_asmbl_14604.p1, initial, 155428, 155587
-recovered pasa_asmbl_14604.p1, terminal, 158614, 158775
-recovered pasa_asmbl_14604.p1, internal, 154370, 154488
-recovered pasa_asmbl_14604.p1, internal, 154816, 154978
-recovered pasa_asmbl_14604.p1, internal, 155071, 155195
-recovered pasa_asmbl_14604.p1, internal, 155428, 155587
-recovered pasa_asmbl_14604.p1, internal, 155860, 156035
-recovered pasa_asmbl_14604.p1, internal, 156315, 156463
-recovered pasa_asmbl_14604.p1, internal, 156659, 156752
-recovered pasa_asmbl_14604.p1, internal, 156983, 157094
-recovered pasa_asmbl_14604.p1, internal, 157183, 157257
-recovered pasa_asmbl_14604.p1, internal, 157603, 157743
-recovered pasa_asmbl_14604.p1, internal, 157880, 157986
-recovered pasa_asmbl_14604.p1, internal, 158165, 158310

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g25553.t1
Valid prediction for snap_scaffold_15-snap.2751-T1
Valid prediction for snap_scaffold_15-snap.2777-T1
Valid prediction for Augustus_model.g25565.t1
Valid prediction for snap_scaffold_15-snap.2774-T1
Couldn't classify 118374, 118569
Couldn't classify 120612, 120771
Sorry, prediction pasa_asmbl_15697.p1 fails validation.
(GAC)	 AG	118374-118569	GT	GGG
(AGC)	 AG	119187-119296	GT	AGG
(AAG)	 AG	119917-120077	GT	AGG
(GGA)	 AG	120612-120771	GG	CAG
-recovered pasa_asmbl_15697.p1, internal, 118374, 118569
-recovered pasa_asmbl_15697.p1, internal, 119187, 119296
-recovered pasa_asmbl_15697.p1, internal, 119917, 120077
Valid prediction for snap_scaffold_15-snap.2780-T1
Valid prediction for GlimmerHMM_glimmerT_38117-T1
Valid prediction for Augustus_model.g25562.t1
Valid prediction for snap_scaffold_15-snap.2765-T1
Valid prediction for GeneMark_model.65478_t
Couldn't classify 157004, 157306
Sorry, prediction pasa_asmbl_15690.p1 fails validation.
(CAG)	 CC	157004-157306	GC	CCG
Valid prediction for GeneMark_model.65453_t
Valid prediction for GeneMark_model.65487_t
Couldn't classify 151778, 152485
Sorry, prediction pasa_asmbl_15693.p1 fails validation.
(ATG)	 AC	147869-147871	GT	TGG
(GAC)	 AG	148162-148235	GT	AGG
(GGC)	 AG	149521-149639	GT	GGG
(CCT)	 AG	149928-150125	GT	CAG
(ACC)	 AG	150410-150501	GT	ATG
(GAT)	 AG	151383-151577	GT	AGG
(CGA)	 AG	151778-152485	CC	CCC
-recovered pasa_asmbl_15693.p1, initial, 147869, 147871
-recovered pasa_asmbl_15693.p1, internal, 148162, 148235
-recovered pasa_asmbl_15693.p1, internal, 149521, 149639
-recovered pasa_asmbl_15693.p1, internal, 149928, 150125
-recovered pasa_asmbl_15693.p1, internal, 150410, 150501
-recovered pasa_asmbl_15693.p1, internal, 151383, 151577
Valid prediction for snap_scaffold_15-snap.2779-T1
Valid prediction for snap_scaffold_15-snap.2753-T1
Couldn't classify 122302, 122403
Couldn't classify 125303, 125355
Sorry, prediction pasa_asmbl_15941.p1 fails validation.
(ATC)	 TA	122302-122403	GT	GGG
(CAA)	 AG	123401-123488	GT	AGG
(GAA)	 AG	123637-123798	GT	AGG
(ATG)	 AG	125303-125355	AC	TCA
-recovered pasa_asmbl_15941.p1, internal, 123401, 123488
-recovered pasa_asmbl_15941.p1, internal, 123637, 123798
Valid prediction for GeneMark_model.65500_t
Valid prediction for GlimmerHMM_glimmerT_38115-T1
Valid prediction for snap_scaffold_15-snap.2760-T1
Valid prediction for GlimmerHMM_glimmerT_38104-T1
Valid prediction for GeneMark_model.65451_t
Couldn't classify 13146, 13254
Couldn't classify 14065, 14162
Sorry, prediction pasa_asmbl_15704.p2 fails validation.
(CTG)	 AG	13146-13254	GT	AGG
(GGA)	 AG	13476-13649	GT	CGG
(ATT)	 AG	14065-14162	TC	GCT
-recovered pasa_asmbl_15704.p2, internal, 13146, 13254
-recovered pasa_asmbl_15704.p2, internal, 13476, 13649
Valid prediction for GlimmerHMM_glimmerT_38100-T1
Valid prediction for Augustus_model.g25548.t1
Valid prediction for Augustus_model.g25552.t1
Valid prediction for GeneMark_model.65480_t
Valid prediction for GeneMark_model.65448_t
Valid prediction for GeneMark_model.65475_t
Valid prediction for snap_scaffold_15-snap.2749-T1
Valid prediction for GlimmerHMM_glimmerT_38110-T1
Valid prediction for snap_scaffold_15-snap.2763-T1
Valid prediction for snap_scaffold_15-snap.2778-T1
Couldn't classify 152549, 152691
Couldn't classify 156812, 156952
Sorry, prediction pasa_asmbl_15691.p1 fails validation.
(CCC)	 CC	152549-152691	GT	AGG
(CAA)	 AG	152902-153031	GT	AGG
(GCC)	 AG	153235-153414	GT	GGG
(TTG)	 AG	155463-155597	GT	AGG
(AGG)	 AG	156812-156952	CC	CCC
-recovered pasa_asmbl_15691.p1, internal, 152902, 153031
-recovered pasa_asmbl_15691.p1, internal, 153235, 153414
-recovered pasa_asmbl_15691.p1, internal, 155463, 155597
Valid prediction for snap_scaffold_15-snap.2770-T1
Couldn't classify 5728, 5793
Couldn't classify 7332, 7469
Sorry, prediction pasa_asmbl_15707.p2 fails validation.
(GTC)	 GT	5728-5793	GT	AGG
(GTC)	 AG	6216-6348	GT	GAG
(ACC)	 AG	6436-6547	GT	AGG
(GCT)	 AG	7021-7126	GT	AGG
(GGC)	 AG	7332-7469	CT	ACC
add_exon() Sorry, pasa_asmbl_15707.p2 6216-6348-terminal-3 is invalid.
-recovered pasa_asmbl_15707.p2, terminal, 6216, 6348
-recovered pasa_asmbl_15707.p2, internal, 6216, 6348
-recovered pasa_asmbl_15707.p2, internal, 6436, 6547
-recovered pasa_asmbl_15707.p2, internal, 7021, 7126
Valid prediction for GlimmerHMM_glimmerT_38098-T1
Valid prediction for GeneMark_model.65490_t
Valid prediction for GlimmerHMM_glimmerT_38118-T1
Valid prediction for GeneMark_model.65506_t
Valid prediction for snap_scaffold_15-snap.2784-T1
Valid prediction for GeneMark_model.65464_t
Valid prediction for GeneMark_model.65497_t
Valid prediction for GeneMark_model.65447_t
Valid prediction for Augustus_model.g25549.t1
Valid prediction for snap_scaffold_15-snap.2782-T1
Valid prediction for GlimmerHMM_glimmerT_38094-T1
Valid prediction for GeneMark_model.65461_t
Couldn't classify 14537, 14674
Sorry, prediction pasa_asmbl_15700.p1 fails validation.
(GTG)	 GG	14537-14674	GT	CGG
(GGC)	 AG	15040-15127	GT	AGG
(GTG)	 AG	15244-15453	GT	TGG
(GCA)	 AG	15698-15828	GT	CGG
(GGG)	 AG	16011-16114	GT	AAG
(CGA)	 AG	16297-16427	GT	TGG
(GCT)	 AG	16543-16739	GT	TGG
(GAC)	 AG	16975-17101	GT	TGG
(GTC)	 AG	17209-17340	GT	AGG
(GTG)	 AG	17665-17936	GT	AGG
(GTT)	 AG	18456-18668	GT	TAG
(GAC)	 AG	18941-19090	GT	TGG
(GGC)	 AG	19197-19563	GT	AGG
(TGA)	 AG	20047-20199	GT	AGG
(TCT)	 AG	20443-20677	GT	TCG
(GTA)	 AG	20980-21116	GT	TGG
(ATG)	 AG	21521-21638	GT	AGG
(CAT)	 AG	22005-22151	GT	AAG
(GCT)	 AG	22517-22701	GT	AGG
(GTG)	 AG	23019-23205	GT	ATG
(ATC)	 AG	23321-23473	GT	AGG
(GGA)	 AG	23813-23882	GT	AGG
(GTG)	 AG	24029-24457	GG	GAG
add_exon() Sorry, pasa_asmbl_15700.p1 21521-21638-initial-1 is invalid.
-recovered pasa_asmbl_15700.p1, initial, 21521, 21638
-recovered pasa_asmbl_15700.p1, terminal, 24029, 24457
-recovered pasa_asmbl_15700.p1, internal, 15040, 15127
-recovered pasa_asmbl_15700.p1, internal, 15244, 15453
-recovered pasa_asmbl_15700.p1, internal, 15698, 15828
-recovered pasa_asmbl_15700.p1, internal, 16011, 16114
-recovered pasa_asmbl_15700.p1, internal, 16297, 16427
-recovered pasa_asmbl_15700.p1, internal, 16543, 16739
-recovered pasa_asmbl_15700.p1, internal, 16975, 17101
-recovered pasa_asmbl_15700.p1, internal, 17209, 17340
-recovered pasa_asmbl_15700.p1, internal, 17665, 17936
-recovered pasa_asmbl_15700.p1, internal, 18456, 18668
-recovered pasa_asmbl_15700.p1, internal, 18941, 19090
-recovered pasa_asmbl_15700.p1, internal, 19197, 19563
-recovered pasa_asmbl_15700.p1, internal, 20047, 20199
-recovered pasa_asmbl_15700.p1, internal, 20443, 20677
-recovered pasa_asmbl_15700.p1, internal, 20980, 21116
-recovered pasa_asmbl_15700.p1, internal, 21521, 21638
-recovered pasa_asmbl_15700.p1, internal, 22005, 22151
-recovered pasa_asmbl_15700.p1, internal, 22517, 22701
-recovered pasa_asmbl_15700.p1, internal, 23019, 23205
-recovered pasa_asmbl_15700.p1, internal, 23321, 23473
-recovered pasa_asmbl_15700.p1, internal, 23813, 23882
Valid prediction for GeneMark_model.65494_t
Valid prediction for GlimmerHMM_glimmerT_38102-T1
Valid prediction for Augustus_model.g25544.t1
Valid prediction for GeneMark_model.65492_t
Valid prediction for GlimmerHMM_glimmerT_38096-T1
Valid prediction for GeneMark_model.65472_t
Valid prediction for GeneMark_model.65470_t
Couldn't classify 125754, 125845
Couldn't classify 135269, 135294
Sorry, prediction pasa_asmbl_15695.p1 fails validation.
(TCC)	 GT	125754-125845	GT	GGG
(AAG)	 AG	128159-128228	GT	AGG
(AGC)	 AG	128341-128426	GT	AGG
(GTC)	 AG	129295-129356	GT	CTG
(CCG)	 AG	130664-130869	GT	AGG
(AAG)	 AG	133456-133601	GT	AAG
(GTA)	 AG	135040-135134	GT	AGG
(AGG)	 AG	135269-135294	GC	GCG
add_exon() Sorry, pasa_asmbl_15695.p1 135040-135134-terminal-2 is invalid.
-recovered pasa_asmbl_15695.p1, terminal, 135040, 135134
-recovered pasa_asmbl_15695.p1, internal, 128159, 128228
-recovered pasa_asmbl_15695.p1, internal, 128341, 128426
-recovered pasa_asmbl_15695.p1, internal, 129295, 129356
-recovered pasa_asmbl_15695.p1, internal, 130664, 130869
-recovered pasa_asmbl_15695.p1, internal, 133456, 133601
-recovered pasa_asmbl_15695.p1, internal, 135040, 135134
-recovered pasa_asmbl_15695.p1, internal, 135269, 135294
Couldn't classify 150500, 150501
Sorry, prediction CodingQuarry_transcript_18168-T1 fails validation.
(ATG)	 CG	150500-150501	GT	ATG
(GAT)	 AG	151383-151577	GT	AGG
(CGA)	 AG	151778-151838	GG	GAG
-recovered CodingQuarry_transcript_18168-T1, terminal, 151778, 151838
-recovered CodingQuarry_transcript_18168-T1, internal, 151383, 151577
Valid prediction for GeneMark_model.65474_t
Valid prediction for GeneMark_model.65468_t
Valid prediction for snap_scaffold_15-snap.2785-T1
Valid prediction for GlimmerHMM_glimmerT_38099-T1
Valid prediction for snap_scaffold_15-snap.2755-T1
Valid prediction for Augustus_model.g25546.t1
Valid prediction for GeneMark_model.65459_t
Valid prediction for GeneMark_model.65455_t
Valid prediction for GeneMark_model.65502_t
Valid prediction for GlimmerHMM_glimmerT_38107-T1
Couldn't classify 10485, 10605
Couldn't classify 11185, 11275
Sorry, prediction pasa_asmbl_15706.p1 fails validation.
(CCC)	 CC	10485-10605	GT	CGG
(GTA)	 AG	10789-10939	GT	AGG
(TGA)	 AG	11185-11275	TA	AGT
-recovered pasa_asmbl_15706.p1, internal, 10789, 10939
Valid prediction for GeneMark_model.65496_t
Valid prediction for GeneMark_model.65483_t
Valid prediction for GlimmerHMM_glimmerT_38091-T1
Valid prediction for GlimmerHMM_glimmerT_38119-T1
Valid prediction for GeneMark_model.65457_t
Valid prediction for GeneMark_model.65485_t
Valid prediction for GlimmerHMM_glimmerT_38108-T1
Valid prediction for GlimmerHMM_glimmerT_38116-T1
Couldn't classify 136487, 136685
Couldn't classify 139241, 139321
Sorry, prediction pasa_asmbl_15694.p1 fails validation.
(GAG)	 AG	136487-136685	GT	AGG
(GCT)	 AG	137676-137779	GT	TGG
(GCA)	 AG	139241-139321	GT	AGG
-recovered pasa_asmbl_15694.p1, internal, 136487, 136685
-recovered pasa_asmbl_15694.p1, internal, 137676, 137779
-recovered pasa_asmbl_15694.p1, internal, 139241, 139321
Valid prediction for GeneMark_model.65484_t
Valid prediction for Augustus_model.g25566.t1
Valid prediction for GeneMark_model.65463_t
Valid prediction for Augustus_model.g25558.t1
Valid prediction for GlimmerHMM_glimmerT_38101-T1
Valid prediction for Augustus_model.g25567.t1
Valid prediction for snap_scaffold_15-snap.2772-T1
Valid prediction for GeneMark_model.65466_t
Valid prediction for Augustus_model.g25560.t1
Valid prediction for Augustus_model.g25551.t1
Valid prediction for GeneMark_model.65498_t
Valid prediction for GlimmerHMM_glimmerT_38113-T1
Couldn't classify 181460, 181591
Sorry, prediction GlimmerHMM_glimmerT_38092-T1 fails validation.
(ATG)	 AC	171365-171560	GT	AGG
(AAG)	 AG	172187-172340	GT	TGG
(GCT)	 AG	172508-172659	GT	GGG
(ACA)	 AG	172758-172819	GT	AAG
(GTT)	 AG	173641-173718	GT	AGG
(ATC)	 AG	173955-174068	GT	AGG
(GTG)	 AG	174197-174246	GT	AGG
(TCT)	 AG	174417-174576	GT	AGG
(ATT)	 AG	175032-175173	GT	ATG
(ATG)	 AG	175309-175418	GT	AGG
(CCG)	 AG	175520-175637	GT	CGG
(GCT)	 AG	176297-176419	GT	AGG
(ATG)	 AG	177021-177221	GT	AGG
(GAG)	 AG	177444-178001	GT	TGG
(GTT)	 AG	178173-178370	GT	CGG
(CCC)	 AG	178669-178842	GT	TGG
(CCC)	 AN	181460-181591	GT	CTG
(TGC)	 AG	185308-185598	GT	GGG
(GTT)	 AG	187700-187740	CC	GAC
-recovered GlimmerHMM_glimmerT_38092-T1, initial, 171365, 171560
add_exon() Sorry, GlimmerHMM_glimmerT_38092-T1 175309-175418-initial-1 is invalid.
-recovered GlimmerHMM_glimmerT_38092-T1, initial, 175309, 175418
add_exon() Sorry, GlimmerHMM_glimmerT_38092-T1 177021-177221-initial-1 is invalid.
-recovered GlimmerHMM_glimmerT_38092-T1, initial, 177021, 177221
-recovered GlimmerHMM_glimmerT_38092-T1, terminal, 187700, 187740
-recovered GlimmerHMM_glimmerT_38092-T1, internal, 172187, 172340
-recovered GlimmerHMM_glimmerT_38092-T1, internal, 172508, 172659
-recovered GlimmerHMM_glimmerT_38092-T1, internal, 172758, 172819
-recovered GlimmerHMM_glimmerT_38092-T1, internal, 173641, 173718
-recovered GlimmerHMM_glimmerT_38092-T1, internal, 173955, 174068
-recovered GlimmerHMM_glimmerT_38092-T1, internal, 174197, 174246
-recovered GlimmerHMM_glimmerT_38092-T1, internal, 174417, 174576
-recovered GlimmerHMM_glimmerT_38092-T1, internal, 175032, 175173
-recovered GlimmerHMM_glimmerT_38092-T1, internal, 175309, 175418
-recovered GlimmerHMM_glimmerT_38092-T1, internal, 175520, 175637
-recovered GlimmerHMM_glimmerT_38092-T1, internal, 176297, 176419
-recovered GlimmerHMM_glimmerT_38092-T1, internal, 177021, 177221
-recovered GlimmerHMM_glimmerT_38092-T1, internal, 177444, 178001
-recovered GlimmerHMM_glimmerT_38092-T1, internal, 178173, 178370
-recovered GlimmerHMM_glimmerT_38092-T1, internal, 178669, 178842
-recovered GlimmerHMM_glimmerT_38092-T1, internal, 185308, 185598
Valid prediction for snap_scaffold_15-snap.2764-T1
Valid prediction for GlimmerHMM_glimmerT_38097-T1
Valid prediction for Augustus_model.g25564.t1
Valid prediction for GeneMark_model.65488_t
Valid prediction for GlimmerHMM_glimmerT_38095-T1
Valid prediction for GeneMark_model.65504_t
Valid prediction for GeneMark_model.65449_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 41330, rend_intergenic: 36284  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53558, rend_intergenic: 43398  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54711, rend_intergenic: 54026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72648, rend_intergenic: 54774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77464, rend_intergenic: 72704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89171, rend_intergenic: 78041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100261, rend_intergenic: 90534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110023, rend_intergenic: 105661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158775, rend_intergenic: 153632  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184578, rend_intergenic: 174733  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190592, rend_intergenic: 186322  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 194970
-exon list size: 832


building trellis

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99.6    
99.8    
99.9    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 41330, rend_intergenic: 36284  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53558, rend_intergenic: 43398  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54711, rend_intergenic: 54026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72648, rend_intergenic: 54774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77464, rend_intergenic: 72704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89171, rend_intergenic: 78041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100261, rend_intergenic: 90534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110023, rend_intergenic: 105661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158775, rend_intergenic: 153632  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184578, rend_intergenic: 174733  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190592, rend_intergenic: 186322  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support