-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_15/scaffold_15_12057786-12318257 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_15-snap.2485-T1 Valid prediction for snap_scaffold_15-snap.2502-T1 Couldn't classify 29067, 29135 Couldn't classify 29584, 29793 Sorry, prediction pasa_asmbl_14476.p1 fails validation. (CTC) GA 29067-29135 GT AGG (GCC) AG 29249-29449 GT GCG (ATT) AG 29584-29793 CG TCC -recovered pasa_asmbl_14476.p1, internal, 29249, 29449 Valid prediction for GeneMark_model.65195_t Couldn't classify 39396, 39485 Sorry, prediction pasa_asmbl_14478.p1 fails validation. (ATG) CC 35532-35582 GT CTG (GAG) AG 35748-35870 GT AGG (ATC) AG 36159-36341 GT AGG (AGT) AG 36612-36740 GT AGG (GAC) AG 37660-37764 GT AGG (AAT) AG 37913-38371 GT TGG (AGA) AG 38599-38681 GT AGG (GCT) AG 38806-38944 GT AGG (GAC) AG 39150-39266 GT GGG (GGT) AG 39396-39485 GA CCG -recovered pasa_asmbl_14478.p1, initial, 35532, 35582 -recovered pasa_asmbl_14478.p1, internal, 35748, 35870 -recovered pasa_asmbl_14478.p1, internal, 36159, 36341 -recovered pasa_asmbl_14478.p1, internal, 36612, 36740 -recovered pasa_asmbl_14478.p1, internal, 37660, 37764 -recovered pasa_asmbl_14478.p1, internal, 37913, 38371 -recovered pasa_asmbl_14478.p1, internal, 38599, 38681 -recovered pasa_asmbl_14478.p1, internal, 38806, 38944 -recovered pasa_asmbl_14478.p1, internal, 39150, 39266 Valid prediction for GlimmerHMM_glimmerT_37886-T1 Valid prediction for GlimmerHMM_glimmerT_37893-T1 Couldn't classify 157658, 157687 Couldn't classify 159981, 160103 Sorry, prediction pasa_asmbl_14488.p1 fails validation. (GGA) AT 157658-157687 GT AGG (GAG) AG 158063-158236 GT AGG (GTG) AG 159981-160103 TC GCT -recovered pasa_asmbl_14488.p1, internal, 158063, 158236 Valid prediction for snap_scaffold_15-snap.2466-T1 Valid prediction for GlimmerHMM_glimmerT_37902-T1 Valid prediction for snap_scaffold_15-snap.2472-T1 Valid prediction for snap_scaffold_15-snap.2475-T1 Couldn't classify 160450, 160567 Couldn't classify 162051, 162076 Sorry, prediction pasa_asmbl_14489.p1 fails validation. (GGG) AG 160450-160567 GT GAG (ACG) AG 160693-160806 GT CAG (ATG) AG 161226-161339 GT TCG (GCG) AG 161493-161606 GT AGG (CCA) AG 161748-161864 GT CAG (ACA) AG 162051-162076 TG CAT add_exon() Sorry, pasa_asmbl_14489.p1 161226-161339-initial-1 is invalid. -recovered pasa_asmbl_14489.p1, initial, 161226, 161339 -recovered pasa_asmbl_14489.p1, internal, 160450, 160567 -recovered pasa_asmbl_14489.p1, internal, 160693, 160806 -recovered pasa_asmbl_14489.p1, internal, 161226, 161339 -recovered pasa_asmbl_14489.p1, internal, 161493, 161606 -recovered pasa_asmbl_14489.p1, internal, 161748, 161864 Couldn't classify 2674, 2787 Couldn't classify 3555, 3857 Sorry, prediction pasa_asmbl_14465.p1 fails validation. (GGC) TG 2674-2787 GT AGG (CCC) AG 2923-3024 GT AGG (CTG) AG 3159-3335 GT AGG (GTG) AG 3555-3857 TG TGT -recovered pasa_asmbl_14465.p1, internal, 2923, 3024 -recovered pasa_asmbl_14465.p1, internal, 3159, 3335 Valid prediction for snap_scaffold_15-snap.2492-T1 Valid prediction for GlimmerHMM_glimmerT_37885-T1 Valid prediction for Augustus_model.g25396.t1 Valid prediction for Augustus_model.g25401.t1 Valid prediction for Augustus_model.g25405.t1 Couldn't classify 56789, 56827 Sorry, prediction pasa_asmbl_14479.p1 fails validation. (ATG) AG 41458-41496 GT AGG (CGA) AG 42393-42589 GT AGG (GTT) AG 42828-42963 GT TGG (GAT) AG 43380-43562 GT AGG (CTC) AG 44142-44291 GT AGG (GAG) AG 44559-44729 GT AGG (ATG) AG 44978-45133 GT AGG (CCC) AG 45299-45448 GT AGG (GTT) AG 45682-45852 GT AGG (ATG) AG 46050-46183 GT CGG (GTG) AG 47223-47430 GT AGG (AAA) AG 47946-48128 GT AGG (GAG) AG 48418-48531 GT AGG (ATG) AG 48736-48890 GC AGG (GGA) AG 49001-49148 GT AGG (CGG) AG 50023-50117 GT AGG (GTC) AG 50941-51172 GT AGG (CAC) AG 51571-51768 GT AGG (ACC) AG 53427-53552 GT AGG (GAG) AG 54502-54657 GT AGG (GTC) AG 56789-56827 CT CTC -recovered pasa_asmbl_14479.p1, initial, 41458, 41496 -recovered pasa_asmbl_14479.p1, initial, 44978, 45133 -recovered pasa_asmbl_14479.p1, initial, 46050, 46183 -recovered pasa_asmbl_14479.p1, initial, 48736, 48890 -recovered pasa_asmbl_14479.p1, internal, 41458, 41496 -recovered pasa_asmbl_14479.p1, internal, 42393, 42589 -recovered pasa_asmbl_14479.p1, internal, 42828, 42963 -recovered pasa_asmbl_14479.p1, internal, 43380, 43562 -recovered pasa_asmbl_14479.p1, internal, 44142, 44291 -recovered pasa_asmbl_14479.p1, internal, 44559, 44729 -recovered pasa_asmbl_14479.p1, internal, 44978, 45133 -recovered pasa_asmbl_14479.p1, internal, 45299, 45448 -recovered pasa_asmbl_14479.p1, internal, 45682, 45852 -recovered pasa_asmbl_14479.p1, internal, 46050, 46183 -recovered pasa_asmbl_14479.p1, internal, 47223, 47430 -recovered pasa_asmbl_14479.p1, internal, 47946, 48128 -recovered pasa_asmbl_14479.p1, internal, 48418, 48531 -recovered pasa_asmbl_14479.p1, internal, 48736, 48890 -recovered pasa_asmbl_14479.p1, internal, 49001, 49148 -recovered pasa_asmbl_14479.p1, internal, 50023, 50117 -recovered pasa_asmbl_14479.p1, internal, 50941, 51172 -recovered pasa_asmbl_14479.p1, internal, 51571, 51768 -recovered pasa_asmbl_14479.p1, internal, 53427, 53552 -recovered pasa_asmbl_14479.p1, internal, 54502, 54657 Valid prediction for GeneMark_model.65192_t Valid prediction for CodingQuarry_transcript_18119-T1 Valid prediction for snap_scaffold_15-snap.2505-T1 Valid prediction for snap_scaffold_15-snap.2477-T1 Couldn't classify 30549, 30596 Couldn't classify 34928, 34957 Sorry, prediction pasa_asmbl_14477.p1 fails validation. (ACC) GG 30549-30596 GT AGG (GAG) AG 33401-33544 GT AGG (TTT) AG 34070-34210 GT AGG (AGA) AG 34350-34532 GT GGG (GTT) AG 34928-34957 AT ACA -recovered pasa_asmbl_14477.p1, internal, 33401, 33544 -recovered pasa_asmbl_14477.p1, internal, 34070, 34210 -recovered pasa_asmbl_14477.p1, internal, 34350, 34532 Couldn't classify 4193, 4954 Sorry, prediction pasa_asmbl_14467.p1 fails validation. (AAA) CC 4193-4954 GT AGG (GCC) AG 6519-6710 GG GAG -recovered pasa_asmbl_14467.p1, terminal, 6519, 6710 Valid prediction for GeneMark_model.65190_t Couldn't classify 149939, 150110 Couldn't classify 154959, 155062 Sorry, prediction pasa_asmbl_14487.p2 fails validation. (CCC) GC 149939-150110 GT TGG (CAA) AG 151240-151300 GT AGG (TTG) AG 153755-153885 GT AGG (ATC) AG 154683-154802 GT CGG (CCG) AG 154959-155062 TG CCT -recovered pasa_asmbl_14487.p2, internal, 151240, 151300 -recovered pasa_asmbl_14487.p2, internal, 153755, 153885 -recovered pasa_asmbl_14487.p2, internal, 154683, 154802 Valid prediction for snap_scaffold_15-snap.2476-T1 Couldn't classify 9833, 9985 Couldn't classify 10298, 10993 Sorry, prediction pasa_asmbl_14468.p1 fails validation. (AGA) CT 9833-9985 GT AGG (GAG) AG 10298-10993 AG GGA Valid prediction for GlimmerHMM_glimmerT_37897-T1 Valid prediction for snap_scaffold_15-snap.2471-T1 Couldn't classify 24940, 25086 Couldn't classify 25658, 25697 Sorry, prediction pasa_asmbl_14473.p1 fails validation. (CAA) AC 24940-25086 GT AGG (AGC) AG 25296-25534 GT TTG (AGG) AG 25658-25697 CG TCC -recovered pasa_asmbl_14473.p1, internal, 25296, 25534 Couldn't classify 59387, 59545 Sorry, prediction pasa_asmbl_14482.p1 fails validation. (GTG) AG 59387-59545 GT AGG (GAC) AG 60186-60352 GT AGG (GGT) AG 62519-62681 GT AGG (GAG) AG 63293-63480 GT AGG (GAT) AG 63824-63974 GT AGG (GGT) AG 64163-64345 GT AGG (CAT) AG 64659-64796 GT ACG (AGC) AG 64929-65120 GT CCG (ACG) AG 65611-65887 GT AGG (ATG) AG 66017-66088 GT TGG (TTC) AG 67467-67609 GT ACG (GCT) AG 68210-68336 GT AGG (GCG) AG 68435-68637 GT AGG (GAG) AG 68748-68951 GT AGG (GAG) AG 69227-69355 GT CCG (GTT) AG 69564-69755 GT TGG (GAG) AG 70019-70134 GT AGG (GGA) AG 70315-70525 CC AAC add_exon() Sorry, pasa_asmbl_14482.p1 66017-66088-initial-1 is invalid. -recovered pasa_asmbl_14482.p1, initial, 66017, 66088 -recovered pasa_asmbl_14482.p1, terminal, 70315, 70525 -recovered pasa_asmbl_14482.p1, internal, 59387, 59545 -recovered pasa_asmbl_14482.p1, internal, 60186, 60352 -recovered pasa_asmbl_14482.p1, internal, 62519, 62681 -recovered pasa_asmbl_14482.p1, internal, 63293, 63480 -recovered pasa_asmbl_14482.p1, internal, 63824, 63974 -recovered pasa_asmbl_14482.p1, internal, 64163, 64345 -recovered pasa_asmbl_14482.p1, internal, 64659, 64796 -recovered pasa_asmbl_14482.p1, internal, 64929, 65120 -recovered pasa_asmbl_14482.p1, internal, 65611, 65887 -recovered pasa_asmbl_14482.p1, internal, 66017, 66088 -recovered pasa_asmbl_14482.p1, internal, 67467, 67609 -recovered pasa_asmbl_14482.p1, internal, 68210, 68336 -recovered pasa_asmbl_14482.p1, internal, 68435, 68637 -recovered pasa_asmbl_14482.p1, internal, 68748, 68951 -recovered pasa_asmbl_14482.p1, internal, 69227, 69355 -recovered pasa_asmbl_14482.p1, internal, 69564, 69755 -recovered pasa_asmbl_14482.p1, internal, 70019, 70134 Valid prediction for GeneMark_model.65210_t Valid prediction for Augustus_model.g25404.t1 Valid prediction for snap_scaffold_15-snap.2503-T1 Valid prediction for GlimmerHMM_glimmerT_37900-T1 Valid prediction for GeneMark_model.65203_t Valid prediction for GeneMark_model.65186_t Valid prediction for GeneMark_model.65207_t Couldn't classify 14524, 14796 Couldn't classify 15014, 15109 Sorry, prediction pasa_asmbl_14470.p2 fails validation. (GAA) GT 14524-14796 GT AGG (GCT) AG 15014-15109 CA ACC Valid prediction for Augustus_model.g25397.t1 Valid prediction for GeneMark_model.65184_t Valid prediction for HiQ_model.g25409.t1 Valid prediction for snap_scaffold_15-snap.2478-T1 Valid prediction for GeneMark_model.65208_t Couldn't classify 27051, 27695 Couldn't classify 28090, 28218 Sorry, prediction pasa_asmbl_14475.p1 fails validation. (CTC) CC 27051-27695 GT TGG (GAG) AG 28090-28218 GA AAG Couldn't classify 20258, 20391 Couldn't classify 21480, 22109 Sorry, prediction pasa_asmbl_14472.p1 fails validation. (TGT) CC 20258-20391 GT AGG (TCT) AG 20618-20747 GT AGG (GTC) AG 21480-22109 CC AAC -recovered pasa_asmbl_14472.p1, internal, 20618, 20747 Valid prediction for snap_scaffold_15-snap.2506-T1 Valid prediction for snap_scaffold_15-snap.2470-T1 Valid prediction for snap_scaffold_15-snap.2504-T1 Valid prediction for Augustus_model.g25400.t1 Valid prediction for GeneMark_model.65198_t Couldn't classify 26229, 26804 Sorry, prediction pasa_asmbl_14474.p1 fails validation. (GAC) AG 26229-26804 GT GGG -recovered pasa_asmbl_14474.p1, internal, 26229, 26804 Valid prediction for GeneMark_model.65206_t Valid prediction for GeneMark_model.65199_t Valid prediction for snap_scaffold_15-snap.2495-T1 Valid prediction for snap_scaffold_15-snap.2491-T1 Valid prediction for Augustus_model.g25399.t1 Valid prediction for GlimmerHMM_glimmerT_37892-T1 Valid prediction for GeneMark_model.65193_t Valid prediction for snap_scaffold_15-snap.2493-T1 Valid prediction for CodingQuarry_transcript_18125-T1 Couldn't classify 39531, 39551 Couldn't classify 40508, 40531 Sorry, prediction pasa_asmbl_14857.p1 fails validation. (CTC) AG 39531-39551 GT AGG (TGT) AG 39692-39892 GT AGG (GCA) AG 40089-40187 GT AGG (TGC) AG 40508-40531 AA GGA -recovered pasa_asmbl_14857.p1, internal, 39531, 39551 -recovered pasa_asmbl_14857.p1, internal, 39692, 39892 -recovered pasa_asmbl_14857.p1, internal, 40089, 40187 Couldn't classify 11186, 11328 Couldn't classify 14270, 14324 Sorry, prediction pasa_asmbl_14469.p1 fails validation. (ACG) TA 11186-11328 GT AGG (ACT) AG 11555-11705 GT ACG (GTG) AG 12087-12245 GT ACG (GTG) AG 12664-12831 GT AGG (GTG) AG 13002-13103 GT AGG (GTT) AG 13203-13406 GT AGG (GAA) AG 13683-13888 GT AGG (TCT) AG 14270-14324 GC AAG -recovered pasa_asmbl_14469.p1, internal, 11555, 11705 -recovered pasa_asmbl_14469.p1, internal, 12087, 12245 -recovered pasa_asmbl_14469.p1, internal, 12664, 12831 -recovered pasa_asmbl_14469.p1, internal, 13002, 13103 -recovered pasa_asmbl_14469.p1, internal, 13203, 13406 -recovered pasa_asmbl_14469.p1, internal, 13683, 13888 -recovered pasa_asmbl_14469.p1, internal, 14270, 14324 Valid prediction for GeneMark_model.65188_t Valid prediction for snap_scaffold_15-snap.2487-T1 Valid prediction for Augustus_model.g25408.t1 Couldn't classify 19391, 19543 Couldn't classify 19757, 20050 Sorry, prediction pasa_asmbl_14471.p1 fails validation. (ATC) CC 19391-19543 GT AGG (GCT) AG 19757-20050 GA CGG Valid prediction for GeneMark_model.65196_t Valid prediction for GlimmerHMM_glimmerT_37898-T1 Valid prediction for snap_scaffold_15-snap.2494-T1 Valid prediction for GeneMark_model.65205_t Valid prediction for snap_scaffold_15-snap.2482-T1 Valid prediction for GlimmerHMM_glimmerT_37891-T1 Valid prediction for GlimmerHMM_glimmerT_37890-T1 Valid prediction for snap_scaffold_15-snap.2467-T1 Valid prediction for snap_scaffold_15-snap.2469-T1 Valid prediction for GeneMark_model.65204_t Valid prediction for snap_scaffold_15-snap.2496-T1 Couldn't classify 247023, 247270 Sorry, prediction pasa_asmbl_14492.p1 fails validation. (ATG) TC 246019-246088 GT AGG (GAA) AG 246777-246863 GT CTG (CTA) AG 247023-247270 TG TCT -recovered pasa_asmbl_14492.p1, initial, 246019, 246088 -recovered pasa_asmbl_14492.p1, internal, 246777, 246863 Valid prediction for snap_scaffold_15-snap.2488-T1 Valid prediction for GeneMark_model.65202_t Valid prediction for snap_scaffold_15-snap.2484-T1 Couldn't classify 162846, 162912 Couldn't classify 163657, 163772 Sorry, prediction pasa_asmbl_14905.p1 fails validation. (GTA) GT 162846-162912 GT CAG (ATG) AG 163440-163553 GT GTG (TTA) AG 163657-163772 GT AGG add_exon() Sorry, pasa_asmbl_14905.p1 163440-163553-initial-1 is invalid. -recovered pasa_asmbl_14905.p1, initial, 163440, 163553 -recovered pasa_asmbl_14905.p1, internal, 163440, 163553 -recovered pasa_asmbl_14905.p1, internal, 163657, 163772 Valid prediction for GlimmerHMM_glimmerT_37896-T1 Valid prediction for GeneMark_model.65189_t Valid prediction for snap_scaffold_15-snap.2468-T1 Couldn't classify 164076, 164195 Sorry, prediction pasa_asmbl_14490.p1 fails validation. (TCC) GC 164076-164195 GT TGG (GGT) AG 164305-164436 GT TAG (TCG) AG 164688-164838 GT TGG (ACT) AG 165256-165776 AC AAA -recovered pasa_asmbl_14490.p1, terminal, 165256, 165776 -recovered pasa_asmbl_14490.p1, internal, 164305, 164436 -recovered pasa_asmbl_14490.p1, internal, 164688, 164838 Valid prediction for Augustus_model.g25393.t1 Valid prediction for snap_scaffold_15-snap.2489-T1 Valid prediction for GeneMark_model.65209_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_15-snap.2497-T1 Valid prediction for Augustus_model.g25392.t1 Valid prediction for HiQ_model.g25394.t1 Valid prediction for snap_scaffold_15-snap.2490-T1 Valid prediction for GeneMark_model.65201_t Valid prediction for GeneMark_model.65200_t Valid prediction for GlimmerHMM_glimmerT_37889-T1 Valid prediction for GlimmerHMM_glimmerT_37899-T1 Valid prediction for Augustus_model.g25406.t1 Valid prediction for GlimmerHMM_glimmerT_37903-T1 Valid prediction for CodingQuarry_transcript_18124-T1 Valid prediction for GeneMark_model.65194_t Valid prediction for Augustus_model.g25402.t1 Valid prediction for GeneMark_model.65197_t Valid prediction for pasa_asmbl_15578.p1 Valid prediction for CodingQuarry_transcript_18123-T1 Valid prediction for Augustus_model.g25395.t1 Valid prediction for snap_scaffold_15-snap.2483-T1 Valid prediction for snap_scaffold_15-snap.2474-T1 Valid prediction for GeneMark_model.65191_t Valid prediction for GlimmerHMM_glimmerT_37895-T1 Valid prediction for Augustus_model.g25398.t1 Valid prediction for GeneMark_model.65187_t Valid prediction for GlimmerHMM_glimmerT_37901-T1 Valid prediction for GeneMark_model.65185_t Valid prediction for snap_scaffold_15-snap.2481-T1 Valid prediction for snap_scaffold_15-snap.2486-T1 Valid prediction for GlimmerHMM_glimmerT_37887-T1 Valid prediction for snap_scaffold_15-snap.2498-T1 Valid prediction for snap_scaffold_15-snap.2480-T1 Valid prediction for GlimmerHMM_glimmerT_37894-T1 Valid prediction for Augustus_model.g25407.t1 Valid prediction for GlimmerHMM_glimmerT_37888-T1 Valid prediction for Augustus_model.g25403.t1 Valid prediction for snap_scaffold_15-snap.2479-T1 Valid prediction for snap_scaffold_15-snap.2500-T1 Valid prediction for snap_scaffold_15-snap.2501-T1 Valid prediction for snap_scaffold_15-snap.2499-T1 Valid prediction for snap_scaffold_15-snap.2473-T1 Valid prediction for GlimmerHMM_glimmerT_37884-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 49220, rend_intergenic: 41061 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55530, rend_intergenic: 53290 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97099, rend_intergenic: 94731 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 260472 -exon list size: 559 building trellis 0.2 0.4 0.5 0.7 0.9 1.1 1.2 1.4 1.6 1.8 2.0 2.1 2.3 2.5 2.7 2.9 3.0 3.2 3.4 3.6 3.7 3.9 4.1 4.3 4.5 4.6 4.8 5.0 5.2 5.3 5.5 5.7 5.9 6.1 6.2 6.4 6.6 6.8 7.0 7.1 7.3 7.5 7.7 7.8 8.0 8.2 8.4 8.6 8.7 8.9 9.1 9.3 9.4 9.6 9.8 10.0 10.2 10.3 10.5 10.7 10.9 11.1 11.2 11.4 11.6 11.8 11.9 12.1 12.3 12.5 12.7 12.8 13.0 13.2 13.4 13.5 13.7 13.9 14.1 14.3 14.4 14.6 14.8 15.0 15.2 15.3 15.5 15.7 15.9 16.0 16.2 16.4 16.6 16.8 16.9 17.1 17.3 17.5 17.6 17.8 18.0 18.2 18.4 18.5 18.7 18.9 19.1 19.3 19.4 19.6 19.8 20.0 20.1 20.3 20.5 20.7 20.9 21.0 21.2 21.4 21.6 21.7 21.9 22.1 22.3 22.5 22.6 22.8 23.0 23.2 23.4 23.5 23.7 23.9 24.1 24.2 24.4 24.6 24.8 25.0 25.1 25.3 25.5 25.7 25.8 26.0 26.2 26.4 26.6 26.7 26.9 27.1 27.3 27.5 27.6 27.8 28.0 28.2 28.3 28.5 28.7 28.9 29.1 29.2 29.4 29.6 29.8 29.9 30.1 30.3 30.5 30.7 30.8 31.0 31.2 31.4 31.6 31.7 31.9 32.1 32.3 32.4 32.6 32.8 33.0 33.2 33.3 33.5 33.7 33.9 34.0 34.2 34.4 34.6 34.8 34.9 35.1 35.3 35.5 35.7 35.8 36.0 36.2 36.4 36.5 36.7 36.9 37.1 37.3 37.4 37.6 37.8 38.0 38.1 38.3 38.5 38.7 38.9 39.0 39.2 39.4 39.6 39.8 39.9 40.1 40.3 40.5 40.6 40.8 41.0 41.2 41.4 41.5 41.7 41.9 42.1 42.2 42.4 42.6 42.8 43.0 43.1 43.3 43.5 43.7 43.9 44.0 44.2 44.4 44.6 44.7 44.9 45.1 45.3 45.5 45.6 45.8 46.0 46.2 46.3 46.5 46.7 46.9 47.1 47.2 47.4 47.6 47.8 48.0 48.1 48.3 48.5 48.7 48.8 49.0 49.2 49.4 49.6 49.7 49.9 50.1 50.3 50.4 50.6 50.8 51.0 51.2 51.3 51.5 51.7 51.9 52.0 52.2 52.4 52.6 52.8 52.9 53.1 53.3 53.5 53.7 53.8 54.0 54.2 54.4 54.5 54.7 54.9 55.1 55.3 55.4 55.6 55.8 56.0 56.1 56.3 56.5 56.7 56.9 57.0 57.2 57.4 57.6 57.8 57.9 58.1 58.3 58.5 58.6 58.8 59.0 59.2 59.4 59.5 59.7 59.9 60.1 60.2 60.4 60.6 60.8 61.0 61.1 61.3 61.5 61.7 61.9 62.0 62.2 62.4 62.6 62.7 62.9 63.1 63.3 63.5 63.6 63.8 64.0 64.2 64.3 64.5 64.7 64.9 65.1 65.2 65.4 65.6 65.8 66.0 66.1 66.3 66.5 66.7 66.8 67.0 67.2 67.4 67.6 67.7 67.9 68.1 68.3 68.4 68.6 68.8 69.0 69.2 69.3 69.5 69.7 69.9 70.1 70.2 70.4 70.6 70.8 70.9 71.1 71.3 71.5 71.7 71.8 72.0 72.2 72.4 72.5 72.7 72.9 73.1 73.3 73.4 73.6 73.8 74.0 74.2 74.3 74.5 74.7 74.9 75.0 75.2 75.4 75.6 75.8 75.9 76.1 76.3 76.5 76.6 76.8 77.0 77.2 77.4 77.5 77.7 77.9 78.1 78.3 78.4 78.6 78.8 79.0 79.1 79.3 79.5 79.7 79.9 80.0 80.2 80.4 80.6 80.7 80.9 81.1 81.3 81.5 81.6 81.8 82.0 82.2 82.4 82.5 82.7 82.9 83.1 83.2 83.4 83.6 83.8 84.0 84.1 84.3 84.5 84.7 84.8 85.0 85.2 85.4 85.6 85.7 85.9 86.1 86.3 86.5 86.6 86.8 87.0 87.2 87.3 87.5 87.7 87.9 88.1 88.2 88.4 88.6 88.8 88.9 89.1 89.3 89.5 89.7 89.8 90.0 90.2 90.4 90.6 90.7 90.9 91.1 91.3 91.4 91.6 91.8 92.0 92.2 92.3 92.5 92.7 92.9 93.0 93.2 93.4 93.6 93.8 93.9 94.1 94.3 94.5 94.7 94.8 95.0 95.2 95.4 95.5 95.7 95.9 96.1 96.3 96.4 96.6 96.8 97.0 97.1 97.3 97.5 97.7 97.9 98.0 98.2 98.4 98.6 98.8 98.9 99.1 99.3 99.5 99.6 99.8 -found 21 predictions from path traversal Error with prediction: snap lend_intergenic: 49220, rend_intergenic: 41061 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55530, rend_intergenic: 53290 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97099, rend_intergenic: 94731 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 17 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 11172 -exon list size: 21 building trellis 4.3 8.7 13.0 17.4 21.7 26.1 30.4 34.8 39.1 43.5 47.8 52.2 56.5 60.9 65.2 69.6 73.9 78.3 82.6 87.0 91.3 95.7 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support