-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_15/scaffold_15_11788101-12073327 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_37866-T1 Valid prediction for snap_scaffold_15-snap.2446-T1 Valid prediction for GlimmerHMM_glimmerT_37864-T1 Valid prediction for snap_scaffold_15-snap.2466-T1 Couldn't classify 250005, 250244 Sorry, prediction pasa_asmbl_14460.p1 fails validation. (GTC) TC 250005-250244 GC AGG (TTC) AG 250667-250795 GT TCG (TTC) AG 250900-250933 GT AGG (GGC) AG 251226-251414 GT CCG (AGT) AG 251694-251887 GT AGG (GGG) AG 252028-252167 GT AAG (GCT) AG 252280-252396 GT AAG (ATA) AG 252729-252851 GT CCG (GAT) AG 252905-252997 GT TCG (AGC) AG 253186-253553 GT AGG (ACG) AG 253668-253756 GT AGG (GAT) AG 253866-253954 GT CAG (GCC) AG 254146-254214 GT GAG (GTA) AG 254308-254458 GT AGG (AAT) AG 254565-254801 AC GAA -recovered pasa_asmbl_14460.p1, terminal, 254565, 254801 -recovered pasa_asmbl_14460.p1, internal, 250667, 250795 -recovered pasa_asmbl_14460.p1, internal, 250900, 250933 -recovered pasa_asmbl_14460.p1, internal, 251226, 251414 -recovered pasa_asmbl_14460.p1, internal, 251694, 251887 -recovered pasa_asmbl_14460.p1, internal, 252028, 252167 -recovered pasa_asmbl_14460.p1, internal, 252280, 252396 -recovered pasa_asmbl_14460.p1, internal, 252729, 252851 -recovered pasa_asmbl_14460.p1, internal, 252905, 252997 -recovered pasa_asmbl_14460.p1, internal, 253186, 253553 -recovered pasa_asmbl_14460.p1, internal, 253668, 253756 -recovered pasa_asmbl_14460.p1, internal, 253866, 253954 -recovered pasa_asmbl_14460.p1, internal, 254146, 254214 -recovered pasa_asmbl_14460.p1, internal, 254308, 254458 Valid prediction for snap_scaffold_15-snap.2464-T1 Valid prediction for Augustus_model.g25375.t1 Valid prediction for GlimmerHMM_glimmerT_37875-T1 Valid prediction for snap_scaffold_15-snap.2445-T1 Valid prediction for GeneMark_model.65167_t Valid prediction for GeneMark_model.65154_t Valid prediction for GeneMark_model.65160_t Couldn't classify 272359, 272472 Couldn't classify 273240, 273542 Sorry, prediction pasa_asmbl_14465.p1 fails validation. (GGC) TG 272359-272472 GT AGG (CCC) AG 272608-272709 GT AGG (CTG) AG 272844-273020 GT AGG (GTG) AG 273240-273542 TG TGT -recovered pasa_asmbl_14465.p1, internal, 272608, 272709 -recovered pasa_asmbl_14465.p1, internal, 272844, 273020 Valid prediction for GlimmerHMM_glimmerT_37863-T1 Valid prediction for GeneMark_model.65169_t Couldn't classify 246292, 246370 Sorry, prediction pasa_asmbl_14458.p1 fails validation. (ATG) CC 244711-244761 GT AGG (TCA) AG 245220-245311 GT AAG (CGA) AG 245418-245570 GT AGG (CAG) AG 245933-245953 GT AGG (AAA) AG 246292-246370 GG CAG -recovered pasa_asmbl_14458.p1, initial, 244711, 244761 -recovered pasa_asmbl_14458.p1, internal, 245220, 245311 -recovered pasa_asmbl_14458.p1, internal, 245418, 245570 -recovered pasa_asmbl_14458.p1, internal, 245933, 245953 Valid prediction for snap_scaffold_15-snap.2435-T1 Valid prediction for snap_scaffold_15-snap.2463-T1 Valid prediction for GlimmerHMM_glimmerT_37881-T1 Valid prediction for snap_scaffold_15-snap.2460-T1 Valid prediction for snap_scaffold_15-snap.2465-T1 Valid prediction for snap_scaffold_15-snap.2422-T1 Couldn't classify 284209, 284481 Couldn't classify 284699, 284794 Sorry, prediction pasa_asmbl_14470.p2 fails validation. (GAA) GT 284209-284481 GT AGG (GCT) AG 284699-284794 CA ACC Valid prediction for CodingQuarry_transcript_18119-T1 Valid prediction for snap_scaffold_15-snap.2427-T1 Valid prediction for HiQ_model.g25380.t1 Valid prediction for GlimmerHMM_glimmerT_37880-T1 Couldn't classify 273878, 274639 Sorry, prediction pasa_asmbl_14467.p1 fails validation. (AAA) CC 273878-274639 GT AGG (GCC) AG 276204-276395 GG GAG -recovered pasa_asmbl_14467.p1, terminal, 276204, 276395 Valid prediction for snap_scaffold_15-snap.2444-T1 Valid prediction for GeneMark_model.65181_t Valid prediction for GlimmerHMM_glimmerT_37852-T1 Valid prediction for GlimmerHMM_glimmerT_37878-T1 Valid prediction for GeneMark_model.65183_t Valid prediction for snap_scaffold_15-snap.2434-T1 Valid prediction for GeneMark_model.65161_t Couldn't classify 280871, 281013 Couldn't classify 283955, 284009 Sorry, prediction pasa_asmbl_14469.p1 fails validation. (ACG) TA 280871-281013 GT AGG (ACT) AG 281240-281390 GT ACG (GTG) AG 281772-281930 GT ACG (GTG) AG 282349-282516 GT AGG (GTG) AG 282687-282788 GT AGG (GTT) AG 282888-283091 GT AGG (GAA) AG 283368-283573 GT AGG (TCT) AG 283955-284009 GC AAG -recovered pasa_asmbl_14469.p1, internal, 281240, 281390 -recovered pasa_asmbl_14469.p1, internal, 281772, 281930 -recovered pasa_asmbl_14469.p1, internal, 282349, 282516 -recovered pasa_asmbl_14469.p1, internal, 282687, 282788 -recovered pasa_asmbl_14469.p1, internal, 282888, 283091 -recovered pasa_asmbl_14469.p1, internal, 283368, 283573 -recovered pasa_asmbl_14469.p1, internal, 283955, 284009 Valid prediction for GeneMark_model.65158_t Valid prediction for snap_scaffold_15-snap.2432-T1 Valid prediction for GeneMark_model.65180_t Valid prediction for GlimmerHMM_glimmerT_37869-T1 Couldn't classify 279518, 279670 Couldn't classify 279983, 280678 Sorry, prediction pasa_asmbl_14468.p1 fails validation. (AGA) CT 279518-279670 GT AGG (GAG) AG 279983-280678 AG GGA Valid prediction for Augustus_model.g25391.t1 Valid prediction for GeneMark_model.65147_t Valid prediction for snap_scaffold_15-snap.2433-T1 Valid prediction for GeneMark_model.65152_t Valid prediction for GeneMark_model.65179_t Couldn't classify 87810, 88079 Sorry, prediction pasa_asmbl_14453.p1 fails validation. (ATG) AA 87073-87198 GT AGG (GTC) AG 87339-87587 GT GGG (TCT) AG 87810-88079 GG AGG -recovered pasa_asmbl_14453.p1, initial, 87073, 87198 -recovered pasa_asmbl_14453.p1, internal, 87339, 87587 Valid prediction for GeneMark_model.65163_t Valid prediction for snap_scaffold_15-snap.2467-T1 Valid prediction for GeneMark_model.65166_t Valid prediction for Augustus_model.g25369.t1 Valid prediction for snap_scaffold_15-snap.2442-T1 Valid prediction for GlimmerHMM_glimmerT_37870-T1 Valid prediction for GlimmerHMM_glimmerT_37867-T1 Valid prediction for Augustus_model.g25382.t1 Valid prediction for GlimmerHMM_glimmerT_37862-T1 Couldn't classify 84808, 84974 Couldn't classify 85148, 85326 Couldn't classify 87810, 88079 Sorry, prediction pasa_asmbl_14452.p1 fails validation. (ATG) AC 83645-83692 GT AGG (GTG) AG 84066-84218 GT AGG (GGA) AG 84310-84401 GT AGG (GGC) AG 84506-84664 GT TGG (GTA) AG 84808-84974 AT ATA (TTG) AC 85148-85326 GT AGG (TTC) AG 85539-85709 GT AGG (GCC) AG 85837-86028 GT AGG (GAT) AG 86145-86204 GT AGG (TTC) AG 86290-86370 GT TGG (GGT) AG 86632-86871 GT AGG (GTG) AG 87097-87198 GT AGG (GTC) AG 87339-87587 GT GGG (TCT) AG 87810-88079 GG AGG -recovered pasa_asmbl_14452.p1, initial, 83645, 83692 -recovered pasa_asmbl_14452.p1, internal, 84066, 84218 -recovered pasa_asmbl_14452.p1, internal, 84310, 84401 -recovered pasa_asmbl_14452.p1, internal, 84506, 84664 -recovered pasa_asmbl_14452.p1, internal, 85539, 85709 -recovered pasa_asmbl_14452.p1, internal, 85837, 86028 -recovered pasa_asmbl_14452.p1, internal, 86145, 86204 -recovered pasa_asmbl_14452.p1, internal, 86290, 86370 -recovered pasa_asmbl_14452.p1, internal, 86632, 86871 -recovered pasa_asmbl_14452.p1, internal, 87097, 87198 -recovered pasa_asmbl_14452.p1, internal, 87339, 87587 Valid prediction for GlimmerHMM_glimmerT_37883-T1 Valid prediction for GeneMark_model.65170_t Valid prediction for Augustus_model.g25373.t1 Valid prediction for Augustus_model.g25390.t1 Valid prediction for snap_scaffold_15-snap.2430-T1 Valid prediction for GeneMark_model.65149_t Valid prediction for GeneMark_model.65172_t Valid prediction for pasa_asmbl_14461.p1 Valid prediction for GeneMark_model.65174_t Valid prediction for snap_scaffold_15-snap.2461-T1 Valid prediction for GlimmerHMM_glimmerT_37856-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_37848-T1 Valid prediction for CodingQuarry_transcript_18115-T1 Couldn't classify 123368, 123526 Sorry, prediction pasa_asmbl_15555.p1 fails validation. (GTC) AG 123368-123526 GT CTG (TTC) AG 123833-123910 GT TGG (AGA) AG 125436-125522 GT TGG (GGC) AG 126231-126284 GT TGG (GGT) AG 126722-126817 GT TTG (GGT) AG 127365-127418 GT AAG (GGT) AG 128620-128673 GT GGG (GGA) AG 128765-128818 GT TGG (GGA) AG 128944-129015 GT CGG (GGG) AG 129121-129156 GT GAG (GGG) AG 129306-129372 GT CGG (GGC) AG 129528-129713 GT AGG (GAC) AG 130099-130167 GT TGG (GCC) AG 131559-131729 GT AGG (ACC) AG 133101-133222 GA AAG -recovered pasa_asmbl_15555.p1, terminal, 133101, 133222 -recovered pasa_asmbl_15555.p1, internal, 123368, 123526 -recovered pasa_asmbl_15555.p1, internal, 123833, 123910 -recovered pasa_asmbl_15555.p1, internal, 125436, 125522 -recovered pasa_asmbl_15555.p1, internal, 126231, 126284 -recovered pasa_asmbl_15555.p1, internal, 126722, 126817 -recovered pasa_asmbl_15555.p1, internal, 127365, 127418 -recovered pasa_asmbl_15555.p1, internal, 128620, 128673 -recovered pasa_asmbl_15555.p1, internal, 128765, 128818 -recovered pasa_asmbl_15555.p1, internal, 128944, 129015 -recovered pasa_asmbl_15555.p1, internal, 129121, 129156 -recovered pasa_asmbl_15555.p1, internal, 129306, 129372 -recovered pasa_asmbl_15555.p1, internal, 129528, 129713 -recovered pasa_asmbl_15555.p1, internal, 130099, 130167 -recovered pasa_asmbl_15555.p1, internal, 131559, 131729 Valid prediction for snap_scaffold_15-snap.2455-T1 Valid prediction for GlimmerHMM_glimmerT_37874-T1 Valid prediction for HiQ_model.g25386.t1 Valid prediction for GlimmerHMM_glimmerT_37853-T1 Couldn't classify 270021, 270103 Sorry, prediction pasa_asmbl_15551.p1 fails validation. (ATG) AG 260307-260381 GT GGG (TCA) AG 260744-260871 GT AAG (GCC) AG 260958-261069 GT TGG (GCC) AG 261190-261301 GT AGG (GAG) AG 261460-261518 GT CAG (GGA) AG 261627-261716 GT CGG (GTT) AG 261842-261914 GT AGG (CTC) AG 262084-262134 GT CGG (CTG) AG 264079-264236 GT AGG (CAT) AG 264366-264440 GT AGG (TAC) AG 264622-264755 GT AGG (AGA) AG 264845-264902 GT GAG (GGC) AG 265035-265142 GT ATG (GAG) AG 265442-265486 GT AAG (GCC) AG 265683-265823 GT AGG (GAT) AG 265967-266011 GT AGG (AGC) AG 266604-266698 GT AGG (GTT) AG 267375-267510 GT AGG (GGG) AG 268926-269033 GT CGG (TTC) AG 269161-269250 GT CAG (GAC) AG 269348-269420 GT AGG (GTG) AG 270021-270103 GG AAG -recovered pasa_asmbl_15551.p1, initial, 260307, 260381 -recovered pasa_asmbl_15551.p1, internal, 260307, 260381 -recovered pasa_asmbl_15551.p1, internal, 260744, 260871 -recovered pasa_asmbl_15551.p1, internal, 260958, 261069 -recovered pasa_asmbl_15551.p1, internal, 261190, 261301 -recovered pasa_asmbl_15551.p1, internal, 261460, 261518 -recovered pasa_asmbl_15551.p1, internal, 261627, 261716 -recovered pasa_asmbl_15551.p1, internal, 261842, 261914 -recovered pasa_asmbl_15551.p1, internal, 262084, 262134 -recovered pasa_asmbl_15551.p1, internal, 264079, 264236 -recovered pasa_asmbl_15551.p1, internal, 264366, 264440 -recovered pasa_asmbl_15551.p1, internal, 264622, 264755 -recovered pasa_asmbl_15551.p1, internal, 264845, 264902 -recovered pasa_asmbl_15551.p1, internal, 265035, 265142 -recovered pasa_asmbl_15551.p1, internal, 265442, 265486 -recovered pasa_asmbl_15551.p1, internal, 265683, 265823 -recovered pasa_asmbl_15551.p1, internal, 265967, 266011 -recovered pasa_asmbl_15551.p1, internal, 266604, 266698 -recovered pasa_asmbl_15551.p1, internal, 267375, 267510 -recovered pasa_asmbl_15551.p1, internal, 268926, 269033 -recovered pasa_asmbl_15551.p1, internal, 269161, 269250 -recovered pasa_asmbl_15551.p1, internal, 269348, 269420 Valid prediction for GeneMark_model.65151_t Valid prediction for snap_scaffold_15-snap.2441-T1 Valid prediction for GlimmerHMM_glimmerT_37857-T1 Valid prediction for snap_scaffold_15-snap.2451-T1 Valid prediction for Augustus_model.g25384.t1 Valid prediction for snap_scaffold_15-snap.2423-T1 Valid prediction for GeneMark_model.65156_t Couldn't classify 100106, 100249 Couldn't classify 105560, 105684 Sorry, prediction pasa_asmbl_15560.p1 fails validation. (ACA) GA 100106-100249 GT ATG (GCT) AG 100552-100684 GT GTG (CCC) AG 101446-101585 GT CGG (ACC) AG 103221-103350 GT CAG (AGC) AG 103716-103855 GT TGG (GTG) AG 104712-104841 GT CAG (GAC) AG 105013-105152 GT TGG (GAG) AG 105312-105441 GT ATG (TAC) AG 105560-105684 GG GGG -recovered pasa_asmbl_15560.p1, internal, 100552, 100684 -recovered pasa_asmbl_15560.p1, internal, 101446, 101585 -recovered pasa_asmbl_15560.p1, internal, 103221, 103350 -recovered pasa_asmbl_15560.p1, internal, 103716, 103855 -recovered pasa_asmbl_15560.p1, internal, 104712, 104841 -recovered pasa_asmbl_15560.p1, internal, 105013, 105152 -recovered pasa_asmbl_15560.p1, internal, 105312, 105441 Valid prediction for pasa_asmbl_15569.p2 Valid prediction for snap_scaffold_15-snap.2450-T1 Valid prediction for snap_scaffold_15-snap.2449-T1 Valid prediction for GeneMark_model.65162_t Valid prediction for snap_scaffold_15-snap.2452-T1 Valid prediction for snap_scaffold_15-snap.2429-T1 Valid prediction for Augustus_model.g25385.t1 Valid prediction for pasa_asmbl_15553.p1 Couldn't classify 94681, 94771 Couldn't classify 97902, 97981 Sorry, prediction pasa_asmbl_15562.p1 fails validation. (ATC) AG 94681-94771 GT AGG (GAG) AG 95544-95686 GT AGG (ATA) AG 96455-96584 GT CTG (TGC) AG 97902-97981 GG CCG -recovered pasa_asmbl_15562.p1, internal, 94681, 94771 -recovered pasa_asmbl_15562.p1, internal, 95544, 95686 -recovered pasa_asmbl_15562.p1, internal, 96455, 96584 Valid prediction for GeneMark_model.65145_t Valid prediction for GlimmerHMM_glimmerT_37876-T1 Valid prediction for GlimmerHMM_glimmerT_37850-T1 Valid prediction for snap_scaffold_15-snap.2437-T1 Valid prediction for GlimmerHMM_glimmerT_37879-T1 Valid prediction for GlimmerHMM_glimmerT_37858-T1 Valid prediction for CodingQuarry_transcript_18113-T1 Valid prediction for snap_scaffold_15-snap.2458-T1 Valid prediction for Augustus_model.g25374.t1 Valid prediction for CodingQuarry_transcript_18117-T1 Valid prediction for snap_scaffold_15-snap.2438-T1 Valid prediction for Augustus_model.g25383.t1 Valid prediction for snap_scaffold_15-snap.2454-T1 Valid prediction for HiQ_model.g25387.t1 Valid prediction for snap_scaffold_15-snap.2457-T1 Valid prediction for snap_scaffold_15-snap.2436-T1 Valid prediction for GlimmerHMM_glimmerT_37859-T1 Valid prediction for GlimmerHMM_glimmerT_37861-T1 Valid prediction for snap_scaffold_15-snap.2456-T1 Valid prediction for HiQ_model.g25381.t1 Valid prediction for GlimmerHMM_glimmerT_37873-T1 Valid prediction for GeneMark_model.65155_t Valid prediction for GeneMark_model.65175_t Couldn't classify 270270, 270329 Couldn't classify 272353, 272470 Sorry, prediction pasa_asmbl_15550.p1 fails validation. (GGC) GT 270270-270329 GT AGG (GGG) AG 270417-270496 GT CAG (GCC) AG 270608-270664 GT GGG (AAT) AG 271336-271404 GT AAG (GCT) AG 271654-271782 GT GGG (TCA) AG 272353-272470 CG CAC -recovered pasa_asmbl_15550.p1, terminal, 271336, 271404 -recovered pasa_asmbl_15550.p1, internal, 270417, 270496 -recovered pasa_asmbl_15550.p1, internal, 270608, 270664 -recovered pasa_asmbl_15550.p1, internal, 271336, 271404 -recovered pasa_asmbl_15550.p1, internal, 271654, 271782 Valid prediction for GeneMark_model.65148_t Valid prediction for CodingQuarry_transcript_18114-T1 Valid prediction for GeneMark_model.65146_t Valid prediction for GeneMark_model.65171_t Couldn't classify 194430, 194515 Sorry, prediction pasa_asmbl_15554.p1 fails validation. (TGT) AG 194430-194515 GT ATG (AAA) AG 194793-194817 GT CAG (TAT) AG 194988-195078 GT CAG (TCA) AG 195479-195614 GT AGG (GAA) AG 195868-196013 GT CGG (ATA) AG 196105-196190 CA AAC -recovered pasa_asmbl_15554.p1, terminal, 196105, 196190 -recovered pasa_asmbl_15554.p1, internal, 194430, 194515 -recovered pasa_asmbl_15554.p1, internal, 194793, 194817 -recovered pasa_asmbl_15554.p1, internal, 194988, 195078 -recovered pasa_asmbl_15554.p1, internal, 195479, 195614 -recovered pasa_asmbl_15554.p1, internal, 195868, 196013 Valid prediction for GlimmerHMM_glimmerT_37882-T1 Valid prediction for HiQ_model.g25371.t1 Valid prediction for GlimmerHMM_glimmerT_37872-T1 Valid prediction for snap_scaffold_15-snap.2439-T1 Valid prediction for GlimmerHMM_glimmerT_37845-T1 Valid prediction for Augustus_model.g25370.t1 Valid prediction for GlimmerHMM_glimmerT_37846-T1 Valid prediction for pasa_asmbl_15549.p2 Valid prediction for snap_scaffold_15-snap.2459-T1 Valid prediction for GlimmerHMM_glimmerT_37877-T1 Valid prediction for GeneMark_model.65159_t Valid prediction for Augustus_model.g25388.t1 Valid prediction for HiQ_model.g25372.t1 Valid prediction for snap_scaffold_15-snap.2424-T1 Valid prediction for snap_scaffold_15-snap.2428-T1 Valid prediction for Augustus_model.g25378.t1 Valid prediction for GlimmerHMM_glimmerT_37871-T1 Couldn't classify 53845, 54132 Couldn't classify 55888, 56064 Sorry, prediction pasa_asmbl_15892.p1 fails validation. (CAG) TC 53845-54132 GT AGG (GCA) AG 55525-55698 GT AAG (CTC) AG 55888-56064 AG AGA -recovered pasa_asmbl_15892.p1, internal, 55525, 55698 Valid prediction for GlimmerHMM_glimmerT_37849-T1 Valid prediction for GlimmerHMM_glimmerT_37868-T1 Valid prediction for GlimmerHMM_glimmerT_37854-T1 Valid prediction for GeneMark_model.65157_t Valid prediction for GeneMark_model.65165_t Valid prediction for GeneMark_model.65182_t Valid prediction for snap_scaffold_15-snap.2425-T1 Valid prediction for snap_scaffold_15-snap.2462-T1 Valid prediction for GeneMark_model.65176_t Valid prediction for Augustus_model.g25379.t1 Valid prediction for Augustus_model.g25376.t1 Valid prediction for GeneMark_model.65168_t Valid prediction for GlimmerHMM_glimmerT_37847-T1 Valid prediction for snap_scaffold_15-snap.2440-T1 Valid prediction for Augustus_model.g25389.t1 Valid prediction for GlimmerHMM_glimmerT_37855-T1 Valid prediction for snap_scaffold_15-snap.2426-T1 Valid prediction for snap_scaffold_15-snap.2453-T1 Couldn't classify 106354, 106459 Couldn't classify 119795, 119904 Sorry, prediction pasa_asmbl_15559.p1 fails validation. (TCC) CC 106354-106459 GT AAG (AGC) AG 106785-106924 GT TGG (GAC) AG 107057-107186 GT ACG (TGC) AG 107386-107525 GT CGG (GAA) AG 107612-107741 GT AAG (AGC) AG 107984-108123 GT CGG (ACC) AG 108521-108650 GT GAG (AGG) AG 108768-108907 GT TGG (GAG) AG 109000-109129 GT CCG (TTC) AG 110434-110576 GT CGG (GTC) AG 111513-111642 GT ATG (TGC) AG 111877-112019 GT TTG (ACC) AG 112807-112936 GT AGG (TGG) AG 113576-113695 GT AGG (ATA) AG 113910-114056 GT ACG (TCT) AG 114143-114259 GT CCG (CCT) AG 115288-115440 GT ACG (TGG) AG 115528-115602 GT TGG (TGT) AG 116336-116475 GT AGG (GTG) AG 116658-116781 GT AGG (GTG) AG 116927-117070 GT CGG (GGT) AG 117210-117374 GT GAG (CTT) AG 117518-117556 GT GGG (GCT) AG 117664-117802 GT ACG (GGA) AG 119073-119215 GT TCG (CTG) AG 119795-119904 GT AGG -recovered pasa_asmbl_15559.p1, internal, 106785, 106924 -recovered pasa_asmbl_15559.p1, internal, 107057, 107186 -recovered pasa_asmbl_15559.p1, internal, 107386, 107525 -recovered pasa_asmbl_15559.p1, internal, 107612, 107741 -recovered pasa_asmbl_15559.p1, internal, 107984, 108123 -recovered pasa_asmbl_15559.p1, internal, 108521, 108650 -recovered pasa_asmbl_15559.p1, internal, 108768, 108907 -recovered pasa_asmbl_15559.p1, internal, 109000, 109129 -recovered pasa_asmbl_15559.p1, internal, 110434, 110576 -recovered pasa_asmbl_15559.p1, internal, 111513, 111642 -recovered pasa_asmbl_15559.p1, internal, 111877, 112019 -recovered pasa_asmbl_15559.p1, internal, 112807, 112936 -recovered pasa_asmbl_15559.p1, internal, 113576, 113695 -recovered pasa_asmbl_15559.p1, internal, 113910, 114056 -recovered pasa_asmbl_15559.p1, internal, 114143, 114259 -recovered pasa_asmbl_15559.p1, internal, 115288, 115440 -recovered pasa_asmbl_15559.p1, internal, 115528, 115602 -recovered pasa_asmbl_15559.p1, internal, 116336, 116475 -recovered pasa_asmbl_15559.p1, internal, 116658, 116781 -recovered pasa_asmbl_15559.p1, internal, 116927, 117070 -recovered pasa_asmbl_15559.p1, internal, 117210, 117374 -recovered pasa_asmbl_15559.p1, internal, 117518, 117556 -recovered pasa_asmbl_15559.p1, internal, 117664, 117802 -recovered pasa_asmbl_15559.p1, internal, 119073, 119215 -recovered pasa_asmbl_15559.p1, internal, 119795, 119904 Valid prediction for GlimmerHMM_glimmerT_37860-T1 Valid prediction for GlimmerHMM_glimmerT_37865-T1 Valid prediction for GeneMark_model.65153_t Valid prediction for CodingQuarry_transcript_18116-T1 Valid prediction for Augustus_model.g25377.t1 Valid prediction for GeneMark_model.65177_t Valid prediction for snap_scaffold_15-snap.2447-T1 Valid prediction for snap_scaffold_15-snap.2443-T1 Valid prediction for snap_scaffold_15-snap.2431-T1 Valid prediction for snap_scaffold_15-snap.2448-T1 Valid prediction for GlimmerHMM_glimmerT_37851-T1 Valid prediction for GeneMark_model.65150_t Valid prediction for GeneMark_model.65164_t Valid prediction for GeneMark_model.65178_t Valid prediction for GeneMark_model.65173_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 44228, rend_intergenic: 40890 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 45187, rend_intergenic: 44792 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 47694, rend_intergenic: 45298 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 285227 -exon list size: 855 building trellis 0.1 0.2 0.4 0.5 0.6 0.7 0.8 0.9 1.1 1.2 1.3 1.4 1.5 1.6 1.8 1.9 2.0 2.1 2.2 2.3 2.5 2.6 2.7 2.8 2.9 3.0 3.2 3.3 3.4 3.5 3.6 3.7 3.9 4.0 4.1 4.2 4.3 4.4 4.6 4.7 4.8 4.9 5.0 5.1 5.3 5.4 5.5 5.6 5.7 5.8 6.0 6.1 6.2 6.3 6.4 6.5 6.7 6.8 6.9 7.0 7.1 7.2 7.4 7.5 7.6 7.7 7.8 7.9 8.1 8.2 8.3 8.4 8.5 8.6 8.8 8.9 9.0 9.1 9.2 9.3 9.5 9.6 9.7 9.8 9.9 10.0 10.2 10.3 10.4 10.5 10.6 10.7 10.9 11.0 11.1 11.2 11.3 11.4 11.6 11.7 11.8 11.9 12.0 12.1 12.3 12.4 12.5 12.6 12.7 12.8 13.0 13.1 13.2 13.3 13.4 13.5 13.7 13.8 13.9 14.0 14.1 14.2 14.4 14.5 14.6 14.7 14.8 14.9 15.1 15.2 15.3 15.4 15.5 15.6 15.8 15.9 16.0 16.1 16.2 16.3 16.5 16.6 16.7 16.8 16.9 17.0 17.2 17.3 17.4 17.5 17.6 17.7 17.9 18.0 18.1 18.2 18.3 18.4 18.6 18.7 18.8 18.9 19.0 19.1 19.3 19.4 19.5 19.6 19.7 19.8 20.0 20.1 20.2 20.3 20.4 20.5 20.7 20.8 20.9 21.0 21.1 21.2 21.4 21.5 21.6 21.7 21.8 21.9 22.1 22.2 22.3 22.4 22.5 22.6 22.8 22.9 23.0 23.1 23.2 23.3 23.5 23.6 23.7 23.8 23.9 24.0 24.2 24.3 24.4 24.5 24.6 24.7 24.9 25.0 25.1 25.2 25.3 25.4 25.6 25.7 25.8 25.9 26.0 26.1 26.3 26.4 26.5 26.6 26.7 26.8 27.0 27.1 27.2 27.3 27.4 27.5 27.7 27.8 27.9 28.0 28.1 28.2 28.4 28.5 28.6 28.7 28.8 28.9 29.1 29.2 29.3 29.4 29.5 29.6 29.8 29.9 30.0 30.1 30.2 30.3 30.5 30.6 30.7 30.8 30.9 31.0 31.2 31.3 31.4 31.5 31.6 31.7 31.9 32.0 32.1 32.2 32.3 32.4 32.6 32.7 32.8 32.9 33.0 33.1 33.3 33.4 33.5 33.6 33.7 33.8 34.0 34.1 34.2 34.3 34.4 34.5 34.7 34.8 34.9 35.0 35.1 35.2 35.4 35.5 35.6 35.7 35.8 35.9 36.1 36.2 36.3 36.4 36.5 36.6 36.8 36.9 37.0 37.1 37.2 37.3 37.5 37.6 37.7 37.8 37.9 38.0 38.2 38.3 38.4 38.5 38.6 38.7 38.9 39.0 39.1 39.2 39.3 39.4 39.6 39.7 39.8 39.9 40.0 40.1 40.3 40.4 40.5 40.6 40.7 40.8 41.0 41.1 41.2 41.3 41.4 41.5 41.7 41.8 41.9 42.0 42.1 42.2 42.4 42.5 42.6 42.7 42.8 42.9 43.1 43.2 43.3 43.4 43.5 43.6 43.8 43.9 44.0 44.1 44.2 44.3 44.5 44.6 44.7 44.8 44.9 45.0 45.2 45.3 45.4 45.5 45.6 45.7 45.9 46.0 46.1 46.2 46.3 46.4 46.6 46.7 46.8 46.9 47.0 47.1 47.3 47.4 47.5 47.6 47.7 47.8 48.0 48.1 48.2 48.3 48.4 48.5 48.7 48.8 48.9 49.0 49.1 49.2 49.4 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.6 50.8 50.9 51.0 51.1 51.2 51.3 51.5 51.6 51.7 51.8 51.9 52.0 52.2 52.3 52.4 52.5 52.6 52.7 52.9 53.0 53.1 53.2 53.3 53.4 53.6 53.7 53.8 53.9 54.0 54.1 54.3 54.4 54.5 54.6 54.7 54.8 55.0 55.1 55.2 55.3 55.4 55.5 55.7 55.8 55.9 56.0 56.1 56.2 56.4 56.5 56.6 56.7 56.8 56.9 57.1 57.2 57.3 57.4 57.5 57.6 57.8 57.9 58.0 58.1 58.2 58.3 58.5 58.6 58.7 58.8 58.9 59.0 59.2 59.3 59.4 59.5 59.6 59.7 59.9 60.0 60.1 60.2 60.3 60.4 60.6 60.7 60.8 60.9 61.0 61.1 61.3 61.4 61.5 61.6 61.7 61.8 62.0 62.1 62.2 62.3 62.4 62.5 62.7 62.8 62.9 63.0 63.1 63.2 63.4 63.5 63.6 63.7 63.8 63.9 64.1 64.2 64.3 64.4 64.5 64.6 64.8 64.9 65.0 65.1 65.2 65.3 65.5 65.6 65.7 65.8 65.9 66.0 66.2 66.3 66.4 66.5 66.6 66.7 66.9 67.0 67.1 67.2 67.3 67.4 67.6 67.7 67.8 67.9 68.0 68.1 68.3 68.4 68.5 68.6 68.7 68.8 69.0 69.1 69.2 69.3 69.4 69.5 69.7 69.8 69.9 70.0 70.1 70.2 70.4 70.5 70.6 70.7 70.8 70.9 71.1 71.2 71.3 71.4 71.5 71.6 71.8 71.9 72.0 72.1 72.2 72.3 72.5 72.6 72.7 72.8 72.9 73.0 73.2 73.3 73.4 73.5 73.6 73.7 73.9 74.0 74.1 74.2 74.3 74.4 74.6 74.7 74.8 74.9 75.0 75.1 75.3 75.4 75.5 75.6 75.7 75.8 76.0 76.1 76.2 76.3 76.4 76.5 76.7 76.8 76.9 77.0 77.1 77.2 77.4 77.5 77.6 77.7 77.8 77.9 78.1 78.2 78.3 78.4 78.5 78.6 78.8 78.9 79.0 79.1 79.2 79.3 79.5 79.6 79.7 79.8 79.9 80.0 80.2 80.3 80.4 80.5 80.6 80.7 80.9 81.0 81.1 81.2 81.3 81.4 81.6 81.7 81.8 81.9 82.0 82.1 82.3 82.4 82.5 82.6 82.7 82.8 83.0 83.1 83.2 83.3 83.4 83.5 83.7 83.8 83.9 84.0 84.1 84.2 84.4 84.5 84.6 84.7 84.8 84.9 85.1 85.2 85.3 85.4 85.5 85.6 85.8 85.9 86.0 86.1 86.2 86.3 86.5 86.6 86.7 86.8 86.9 87.0 87.2 87.3 87.4 87.5 87.6 87.7 87.9 88.0 88.1 88.2 88.3 88.4 88.6 88.7 88.8 88.9 89.0 89.1 89.3 89.4 89.5 89.6 89.7 89.8 90.0 90.1 90.2 90.3 90.4 90.5 90.7 90.8 90.9 91.0 91.1 91.2 91.4 91.5 91.6 91.7 91.8 91.9 92.1 92.2 92.3 92.4 92.5 92.6 92.8 92.9 93.0 93.1 93.2 93.3 93.5 93.6 93.7 93.8 93.9 94.0 94.2 94.3 94.4 94.5 94.6 94.7 94.9 95.0 95.1 95.2 95.3 95.4 95.6 95.7 95.8 95.9 96.0 96.1 96.3 96.4 96.5 96.6 96.7 96.8 97.0 97.1 97.2 97.3 97.4 97.5 97.7 97.8 97.9 98.0 98.1 98.2 98.4 98.5 98.6 98.7 98.8 98.9 99.1 99.2 99.3 99.4 99.5 99.6 99.8 99.9 -found 33 predictions from path traversal Error with prediction: snap lend_intergenic: 44228, rend_intergenic: 40890 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 45187, rend_intergenic: 44792 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 47694, rend_intergenic: 45298 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 30 predictions persist after filtering for low support