-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_15/scaffold_15_10443201-10705139 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g25247.t1 Valid prediction for snap_scaffold_15-snap.2170-T1 Valid prediction for GeneMark_model.64836_t Couldn't classify 122428, 122574 Couldn't classify 124947, 125099 Sorry, prediction pasa_asmbl_14844.p2 fails validation. (TGC) TC 122428-122574 GT AGG (ACG) AG 124708-124815 GT AGG (GGC) AG 124947-125099 GT CGG -recovered pasa_asmbl_14844.p2, internal, 124708, 124815 -recovered pasa_asmbl_14844.p2, internal, 124947, 125099 Valid prediction for snap_scaffold_15-snap.2153-T1 Valid prediction for GeneMark_model.64844_t Valid prediction for snap_scaffold_15-snap.2198-T1 Valid prediction for Augustus_model.g25250.t1 Valid prediction for GeneMark_model.64849_t Valid prediction for Augustus_model.g25240.t1 Valid prediction for GeneMark_model.64825_t Valid prediction for GlimmerHMM_glimmerT_37661-T1 Valid prediction for GlimmerHMM_glimmerT_37638-T1 Valid prediction for snap_scaffold_15-snap.2194-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_37660-T1 Valid prediction for GeneMark_model.64816_t Valid prediction for snap_scaffold_15-snap.2164-T1 Valid prediction for snap_scaffold_15-snap.2181-T1 Valid prediction for snap_scaffold_15-snap.2187-T1 Valid prediction for Augustus_model.g25239.t1 Valid prediction for Augustus_model.g25245.t1 Valid prediction for snap_scaffold_15-snap.2177-T1 Valid prediction for GlimmerHMM_glimmerT_37640-T1 Valid prediction for GlimmerHMM_glimmerT_37639-T1 Valid prediction for snap_scaffold_15-snap.2161-T1 Valid prediction for GeneMark_model.64828_t Valid prediction for GlimmerHMM_glimmerT_37645-T1 Valid prediction for GeneMark_model.64847_t Valid prediction for snap_scaffold_15-snap.2199-T1 Valid prediction for snap_scaffold_15-snap.2188-T1 Valid prediction for snap_scaffold_15-snap.2192-T1 Valid prediction for GlimmerHMM_glimmerT_37658-T1 Valid prediction for GlimmerHMM_glimmerT_37643-T1 Valid prediction for snap_scaffold_15-snap.2150-T1 Valid prediction for Augustus_model.g25246.t1 Valid prediction for snap_scaffold_15-snap.2196-T1 Valid prediction for GeneMark_model.64834_t Valid prediction for snap_scaffold_15-snap.2160-T1 Valid prediction for GeneMark_model.64853_t Valid prediction for snap_scaffold_15-snap.2180-T1 Valid prediction for GeneMark_model.64830_t Valid prediction for GeneMark_model.64851_t Valid prediction for GeneMark_model.64820_t Valid prediction for GeneMark_model.64811_t Valid prediction for GeneMark_model.64821_t Valid prediction for GeneMark_model.64818_t Valid prediction for GlimmerHMM_glimmerT_37649-T1 Valid prediction for CodingQuarry_transcript_18084-T1 Valid prediction for GlimmerHMM_glimmerT_37637-T1 Valid prediction for GlimmerHMM_glimmerT_37651-T1 Valid prediction for snap_scaffold_15-snap.2156-T1 Couldn't classify 170705, 175345 Sorry, prediction pasa_asmbl_14400.p1 fails validation. (GTC) CA 170705-175345 GC GAG Valid prediction for snap_scaffold_15-snap.2184-T1 Valid prediction for GeneMark_model.64841_t Valid prediction for snap_scaffold_15-snap.2176-T1 Valid prediction for snap_scaffold_15-snap.2159-T1 Valid prediction for GeneMark_model.64840_t Valid prediction for snap_scaffold_15-snap.2147-T1 Valid prediction for GlimmerHMM_glimmerT_37653-T1 Valid prediction for GeneMark_model.64823_t Valid prediction for snap_scaffold_15-snap.2158-T1 Valid prediction for GlimmerHMM_glimmerT_37636-T1 Valid prediction for snap_scaffold_15-snap.2172-T1 Valid prediction for GlimmerHMM_glimmerT_37655-T1 Valid prediction for GlimmerHMM_glimmerT_37656-T1 Valid prediction for GeneMark_model.64855_t Valid prediction for snap_scaffold_15-snap.2167-T1 Valid prediction for snap_scaffold_15-snap.2189-T1 Valid prediction for snap_scaffold_15-snap.2200-T1 Valid prediction for GeneMark_model.64845_t Valid prediction for GeneMark_model.64848_t Valid prediction for snap_scaffold_15-snap.2163-T1 Valid prediction for pasa_asmbl_14403.p1 Valid prediction for snap_scaffold_15-snap.2166-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for HiQ_model.g25249.t1 Valid prediction for snap_scaffold_15-snap.2165-T1 Valid prediction for GeneMark_model.64838_t Valid prediction for snap_scaffold_15-snap.2195-T1 Valid prediction for GeneMark_model.64814_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_15-snap.2175-T1 Valid prediction for GlimmerHMM_glimmerT_37650-T1 Valid prediction for GeneMark_model.64817_t Valid prediction for snap_scaffold_15-snap.2193-T1 Valid prediction for snap_scaffold_15-snap.2148-T1 Couldn't classify 18320, 18364 Couldn't classify 19868, 19966 Sorry, prediction pasa_asmbl_15469.p1 fails validation. (GGC) TT 18320-18364 GT AGG (GGT) AG 19063-19245 GT AGG (GCA) AG 19573-19710 GT AGG (GCA) AG 19868-19966 CA GCC -recovered pasa_asmbl_15469.p1, internal, 19063, 19245 -recovered pasa_asmbl_15469.p1, internal, 19573, 19710 Valid prediction for GeneMark_model.64831_t Valid prediction for GeneMark_model.64843_t Couldn't classify 40769, 40923 Couldn't classify 41668, 41857 Sorry, prediction pasa_asmbl_15466.p1 fails validation. (GTG) AG 40769-40923 GT AGG (TAA) AG 41215-41362 GT AGG (CTG) AG 41455-41549 GT AGG (AGA) AG 41668-41857 CC AGC -recovered pasa_asmbl_15466.p1, internal, 40769, 40923 -recovered pasa_asmbl_15466.p1, internal, 41215, 41362 -recovered pasa_asmbl_15466.p1, internal, 41455, 41549 Valid prediction for GlimmerHMM_glimmerT_37654-T1 Couldn't classify 198194, 198307 Couldn't classify 201327, 201413 Sorry, prediction pasa_asmbl_15454.p1 fails validation. (CAG) TG 198194-198307 GT AGG (TCT) AG 198587-198688 GT AGG (AGT) AG 199371-199478 GT CCG (ATC) AG 200128-200307 GT AGG (GTG) AG 200677-200843 GT GTG (GCT) AG 201113-201236 GT AGG (GCC) AG 201327-201413 GG GAG -recovered pasa_asmbl_15454.p1, internal, 198587, 198688 -recovered pasa_asmbl_15454.p1, internal, 199371, 199478 -recovered pasa_asmbl_15454.p1, internal, 200128, 200307 -recovered pasa_asmbl_15454.p1, internal, 200677, 200843 -recovered pasa_asmbl_15454.p1, internal, 201113, 201236 Valid prediction for GeneMark_model.64842_t Couldn't classify 78690, 79164 Sorry, prediction pasa_asmbl_15456.p1 fails validation. (ATG) GA 78286-78458 GT AGG (TGA) AG 78690-79164 AA CCA -recovered pasa_asmbl_15456.p1, initial, 78286, 78458 Valid prediction for GeneMark_model.64822_t Valid prediction for GeneMark_model.64810_t Valid prediction for snap_scaffold_15-snap.2149-T1 Valid prediction for CodingQuarry_transcript_18082-T1 Valid prediction for GlimmerHMM_glimmerT_37647-T1 Valid prediction for GeneMark_model.64827_t Valid prediction for snap_scaffold_15-snap.2179-T1 Valid prediction for GeneMark_model.64815_t Couldn't classify 212125, 212165 Couldn't classify 216633, 216731 Sorry, prediction pasa_asmbl_15450.p1 fails validation. (GAG) CT 212125-212165 GT GGG (GAG) AG 213808-213958 GT CGG (GAG) AG 214754-214929 GT AGG (GCT) AG 215409-215544 GT AGG (GCC) AG 215698-215847 GT GGG (GTG) AG 216081-216227 GT AGG (GCA) AG 216633-216731 AA ACA -recovered pasa_asmbl_15450.p1, internal, 213808, 213958 -recovered pasa_asmbl_15450.p1, internal, 214754, 214929 -recovered pasa_asmbl_15450.p1, internal, 215409, 215544 -recovered pasa_asmbl_15450.p1, internal, 215698, 215847 -recovered pasa_asmbl_15450.p1, internal, 216081, 216227 Valid prediction for GeneMark_model.64837_t Valid prediction for GlimmerHMM_glimmerT_37648-T1 Valid prediction for snap_scaffold_15-snap.2155-T1 Couldn't classify 217622, 217628 Sorry, prediction pasa_asmbl_15449.p1 fails validation. (GAG) CT 217622-217628 GT ATG (TGG) AG 217872-218077 GT AGG (GTG) AG 218535-218689 GT AGG (GGC) AG 219170-219359 GT AGG (AGC) AG 220189-220338 AT GAA -recovered pasa_asmbl_15449.p1, terminal, 220189, 220338 -recovered pasa_asmbl_15449.p1, internal, 217872, 218077 -recovered pasa_asmbl_15449.p1, internal, 218535, 218689 -recovered pasa_asmbl_15449.p1, internal, 219170, 219359 Valid prediction for Augustus_model.g25241.t1 Valid prediction for snap_scaffold_15-snap.2174-T1 Valid prediction for snap_scaffold_15-snap.2191-T1 Valid prediction for GlimmerHMM_glimmerT_37657-T1 Valid prediction for GeneMark_model.64846_t Couldn't classify 208720, 208890 Couldn't classify 208974, 209132 Sorry, prediction pasa_asmbl_15452.p1 fails validation. (GTG) AG 208720-208890 GT ACG (GGC) AG 208974-209132 GA AGG -recovered pasa_asmbl_15452.p1, internal, 208720, 208890 Couldn't classify 202593, 202650 Couldn't classify 207465, 207473 Sorry, prediction pasa_asmbl_15453.p1 fails validation. (GCC) CA 202593-202650 GT AGG (CCC) AG 204081-204229 GT AGG (GCT) AG 205116-205253 GT AGG (GTG) AG 205342-205455 GT AGG (GAG) AG 205637-205792 GT AGG (TTG) AG 205998-206168 GT AGG (AGA) AG 206520-206699 GT AGG (GAG) AG 206896-207030 GT AGG (TCT) AG 207189-207338 GT AGG (GCT) AG 207465-207473 AA GCA -recovered pasa_asmbl_15453.p1, internal, 204081, 204229 -recovered pasa_asmbl_15453.p1, internal, 205116, 205253 -recovered pasa_asmbl_15453.p1, internal, 205342, 205455 -recovered pasa_asmbl_15453.p1, internal, 205637, 205792 -recovered pasa_asmbl_15453.p1, internal, 205998, 206168 -recovered pasa_asmbl_15453.p1, internal, 206520, 206699 -recovered pasa_asmbl_15453.p1, internal, 206896, 207030 -recovered pasa_asmbl_15453.p1, internal, 207189, 207338 Valid prediction for snap_scaffold_15-snap.2157-T1 Valid prediction for CodingQuarry_transcript_18081-T1 Couldn't classify 35544, 35699 Couldn't classify 39226, 39349 Sorry, prediction pasa_asmbl_15467.p1 fails validation. (GAG) TG 35544-35699 GT AGG (TCA) AG 35964-36095 GT AGG (CGG) AG 36303-36499 GT AGG (GTA) AG 36808-36940 GT TGG (GAG) AG 37052-37234 GT AGG (TTG) AG 37400-37549 GT AGG (GGT) AG 37701-37877 GT AGG (ATC) AG 37979-38134 GT AAG (GAG) AG 38259-38414 GT TGG (ATC) AG 38604-38774 GT AGG (AGC) AG 38915-39048 GT AGG (GTG) AG 39226-39349 AG AGA -recovered pasa_asmbl_15467.p1, internal, 35964, 36095 -recovered pasa_asmbl_15467.p1, internal, 36303, 36499 -recovered pasa_asmbl_15467.p1, internal, 36808, 36940 -recovered pasa_asmbl_15467.p1, internal, 37052, 37234 -recovered pasa_asmbl_15467.p1, internal, 37400, 37549 -recovered pasa_asmbl_15467.p1, internal, 37701, 37877 -recovered pasa_asmbl_15467.p1, internal, 37979, 38134 -recovered pasa_asmbl_15467.p1, internal, 38259, 38414 -recovered pasa_asmbl_15467.p1, internal, 38604, 38774 -recovered pasa_asmbl_15467.p1, internal, 38915, 39048 Valid prediction for snap_scaffold_15-snap.2151-T1 Valid prediction for GeneMark_model.64854_t Valid prediction for GlimmerHMM_glimmerT_37659-T1 Valid prediction for GlimmerHMM_glimmerT_37652-T1 Valid prediction for GlimmerHMM_glimmerT_37642-T1 Valid prediction for GeneMark_model.64850_t Valid prediction for GeneMark_model.64826_t Valid prediction for HiQ_model.g25248.t1 Valid prediction for GeneMark_model.64852_t Valid prediction for GeneMark_model.64819_t Valid prediction for GeneMark_model.64813_t Valid prediction for snap_scaffold_15-snap.2154-T1 Valid prediction for snap_scaffold_15-snap.2190-T1 Valid prediction for snap_scaffold_15-snap.2183-T1 Valid prediction for GeneMark_model.64829_t Valid prediction for snap_scaffold_15-snap.2186-T1 Valid prediction for GeneMark_model.64835_t Valid prediction for Augustus_model.g25238.t1 Valid prediction for GeneMark_model.64809_t Valid prediction for GeneMark_model.64812_t Valid prediction for GeneMark_model.64824_t Valid prediction for snap_scaffold_15-snap.2185-T1 Valid prediction for snap_scaffold_15-snap.2169-T1 Valid prediction for Augustus_model.g25243.t1 Couldn't classify 211993, 212046 Sorry, prediction pasa_asmbl_15451.p1 fails validation. (ATG) AG 211074-211211 GT GGG (GAG) AG 211434-211532 GT AGG (GGG) AG 211620-211781 GT GGG (AGC) AG 211993-212046 CG AGC -recovered pasa_asmbl_15451.p1, initial, 211074, 211211 -recovered pasa_asmbl_15451.p1, internal, 211074, 211211 -recovered pasa_asmbl_15451.p1, internal, 211434, 211532 -recovered pasa_asmbl_15451.p1, internal, 211620, 211781 Valid prediction for Augustus_model.g25244.t1 Valid prediction for snap_scaffold_15-snap.2152-T1 Valid prediction for GeneMark_model.64856_t Valid prediction for snap_scaffold_15-snap.2182-T1 Valid prediction for snap_scaffold_15-snap.2178-T1 Valid prediction for snap_scaffold_15-snap.2171-T1 Valid prediction for snap_scaffold_15-snap.2168-T1 Couldn't classify 48076, 48284 Sorry, prediction pasa_asmbl_15458.p1 fails validation. (TCT) CC 48076-48284 GC AGG (GGT) AG 49047-49209 GT AGG (GAC) AG 49544-49731 GT AAG (GAT) AG 49922-50072 GT AGG (GCA) AG 50566-50748 GT AGG (CAC) AG 50835-50972 GT GGG (GCC) AG 51112-51303 GT CTG (CTT) AG 51583-51889 GT AGG (ATA) AG 52195-52263 GT GGG (GTG) AG 52900-53033 GT ATG (ATG) AG 53324-53444 GT TGG (GTG) AG 53658-53866 GT AGG (GAG) AG 54282-54488 GT AGG (GAG) AG 54594-54722 GT CGG (CAA) AG 54896-55174 GT AGG (GAG) AG 55388-55480 GT CGG (CCC) AG 56278-56336 GT AGG (GGT) AG 58175-58448 GG AAG -recovered pasa_asmbl_15458.p1, initial, 53324, 53444 -recovered pasa_asmbl_15458.p1, terminal, 58175, 58448 -recovered pasa_asmbl_15458.p1, internal, 49047, 49209 -recovered pasa_asmbl_15458.p1, internal, 49544, 49731 -recovered pasa_asmbl_15458.p1, internal, 49922, 50072 -recovered pasa_asmbl_15458.p1, internal, 50566, 50748 -recovered pasa_asmbl_15458.p1, internal, 50835, 50972 -recovered pasa_asmbl_15458.p1, internal, 51112, 51303 -recovered pasa_asmbl_15458.p1, internal, 51583, 51889 -recovered pasa_asmbl_15458.p1, internal, 52195, 52263 -recovered pasa_asmbl_15458.p1, internal, 52900, 53033 -recovered pasa_asmbl_15458.p1, internal, 53324, 53444 -recovered pasa_asmbl_15458.p1, internal, 53658, 53866 -recovered pasa_asmbl_15458.p1, internal, 54282, 54488 -recovered pasa_asmbl_15458.p1, internal, 54594, 54722 -recovered pasa_asmbl_15458.p1, internal, 54896, 55174 -recovered pasa_asmbl_15458.p1, internal, 55388, 55480 -recovered pasa_asmbl_15458.p1, internal, 56278, 56336 Valid prediction for GeneMark_model.64839_t Valid prediction for snap_scaffold_15-snap.2162-T1 Valid prediction for GlimmerHMM_glimmerT_37646-T1 Valid prediction for CodingQuarry_transcript_18080-T1 Valid prediction for GlimmerHMM_glimmerT_37662-T1 Valid prediction for Augustus_model.g25242.t1 Valid prediction for GlimmerHMM_glimmerT_37641-T1 Valid prediction for GlimmerHMM_glimmerT_37644-T1 Valid prediction for snap_scaffold_15-snap.2173-T1 Couldn't classify 32352, 32465 Couldn't classify 35207, 35233 Sorry, prediction pasa_asmbl_15468.p1 fails validation. (GAG) AG 32352-32465 GT GGG (GAG) AG 32658-32755 GT AGG (CGA) AG 32899-33046 GT CGG (GGG) AG 33277-33405 GT AGG (ACA) AG 33763-33942 GT AGG (GGT) AG 34348-34563 GT AGG (GCG) AG 34680-34781 GT AGG (ACT) AG 34864-34983 GT AGG (GAT) AG 35207-35233 GT TGG -recovered pasa_asmbl_15468.p1, internal, 32352, 32465 -recovered pasa_asmbl_15468.p1, internal, 32658, 32755 -recovered pasa_asmbl_15468.p1, internal, 32899, 33046 -recovered pasa_asmbl_15468.p1, internal, 33277, 33405 -recovered pasa_asmbl_15468.p1, internal, 33763, 33942 -recovered pasa_asmbl_15468.p1, internal, 34348, 34563 -recovered pasa_asmbl_15468.p1, internal, 34680, 34781 -recovered pasa_asmbl_15468.p1, internal, 34864, 34983 -recovered pasa_asmbl_15468.p1, internal, 35207, 35233 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13359, rend_intergenic: 4670 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 18517, rend_intergenic: 15513 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 22732, rend_intergenic: 19417 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 25315, rend_intergenic: 22867 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26346, rend_intergenic: 25516 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 41018, rend_intergenic: 28922 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54005, rend_intergenic: 43483 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 56845, rend_intergenic: 54005 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88606, rend_intergenic: 56953 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114097, rend_intergenic: 104610 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122858, rend_intergenic: 115803 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128225, rend_intergenic: 124349 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 132238, rend_intergenic: 129080 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165852, rend_intergenic: 154898 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 175345, rend_intergenic: 174083 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 201122, rend_intergenic: 195176 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 212969, rend_intergenic: 209586 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 246479, rend_intergenic: 213632 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 261939 -exon list size: 920 building trellis 0.1 0.2 0.3 0.4 0.5 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.3 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.7 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.1 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.1 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.2 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.3 44.4 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.6 45.7 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.9 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.5 49.6 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.4 50.5 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.1 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.3 54.4 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.6 55.7 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.8 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.3 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.9 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.9 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.9 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.3 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.7 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.2 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.5 99.6 99.7 99.8 99.9 -found 30 predictions from path traversal Error with prediction: snap lend_intergenic: 13359, rend_intergenic: 4670 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 18517, rend_intergenic: 15513 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 22732, rend_intergenic: 19417 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 25315, rend_intergenic: 22867 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26346, rend_intergenic: 25516 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 41018, rend_intergenic: 28922 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54005, rend_intergenic: 43483 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 56845, rend_intergenic: 54005 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88606, rend_intergenic: 56953 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114097, rend_intergenic: 104610 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122858, rend_intergenic: 115803 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128225, rend_intergenic: 124349 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 132238, rend_intergenic: 129080 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165852, rend_intergenic: 154898 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 175345, rend_intergenic: 174083 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 201122, rend_intergenic: 195176 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 212969, rend_intergenic: 209586 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 246479, rend_intergenic: 213632 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 16 predictions persist after filtering for low support -building DP trellis -building trellis in range 229589 - 261939 -exon list size: 122 building trellis 0.8 1.6 2.4 3.2 4.0 4.8 5.6 6.5 7.3 8.1 8.9 9.7 10.5 11.3 12.1 12.9 13.7 14.5 15.3 16.1 16.9 17.7 18.5 19.4 20.2 21.0 21.8 22.6 23.4 24.2 25.0 25.8 26.6 27.4 28.2 29.0 29.8 30.6 31.5 32.3 33.1 33.9 34.7 35.5 36.3 37.1 37.9 38.7 39.5 40.3 41.1 41.9 42.7 43.5 44.4 45.2 46.0 46.8 47.6 48.4 49.2 50.0 50.8 51.6 52.4 53.2 54.0 54.8 55.6 56.5 57.3 58.1 58.9 59.7 60.5 61.3 62.1 62.9 63.7 64.5 65.3 66.1 66.9 67.7 68.5 69.4 70.2 71.0 71.8 72.6 73.4 74.2 75.0 75.8 76.6 77.4 78.2 79.0 79.8 80.6 81.5 82.3 83.1 83.9 84.7 85.5 86.3 87.1 87.9 88.7 89.5 90.3 91.1 91.9 92.7 93.5 94.4 95.2 96.0 96.8 97.6 98.4 99.2 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support -building DP trellis -building trellis in range 229589 - 240733 -exon list size: 48 building trellis 2.0 4.0 6.0 8.0 10.0 12.0 14.0 16.0 18.0 20.0 22.0 24.0 26.0 28.0 30.0 32.0 34.0 36.0 38.0 40.0 42.0 44.0 46.0 48.0 50.0 52.0 54.0 56.0 58.0 60.0 62.0 64.0 66.0 68.0 70.0 72.0 74.0 76.0 78.0 80.0 82.0 84.0 86.0 88.0 90.0 92.0 94.0 96.0 98.0 -found 4 predictions from path traversal -reporting highest scoring path thru the trellis. -found 4 predictions persist after filtering for low support -building DP trellis -building trellis in range 243729 - 261939 -exon list size: 50 building trellis 1.9 3.8 5.8 7.7 9.6 11.5 13.5 15.4 17.3 19.2 21.2 23.1 25.0 26.9 28.8 30.8 32.7 34.6 36.5 38.5 40.4 42.3 44.2 46.2 48.1 50.0 51.9 53.8 55.8 57.7 59.6 61.5 63.5 65.4 67.3 69.2 71.2 73.1 75.0 76.9 78.8 80.8 82.7 84.6 86.5 88.5 90.4 92.3 94.2 96.2 98.1 -found 4 predictions from path traversal -reporting highest scoring path thru the trellis. -found 4 predictions persist after filtering for low support