-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_15/scaffold_15_10201178-10447257

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_37616-T1
Valid prediction for GeneMark_model.64738_t
Valid prediction for pasa_asmbl_14397.p1
Valid prediction for GeneMark_model.64761_t
Valid prediction for Augustus_model.g25219.t1
Valid prediction for GeneMark_model.64785_t
Valid prediction for GeneMark_model.64789_t
Valid prediction for GeneMark_model.64806_t
Valid prediction for GeneMark_model.64791_t
Valid prediction for GlimmerHMM_glimmerT_37632-T1
Valid prediction for snap_scaffold_15-snap.2104-T1
Valid prediction for GeneMark_model.64767_t
Valid prediction for GlimmerHMM_glimmerT_37612-T1
Valid prediction for snap_scaffold_15-snap.2120-T1
Valid prediction for GeneMark_model.64757_t
Valid prediction for GeneMark_model.64804_t
Valid prediction for GeneMark_model.64773_t
Valid prediction for snap_scaffold_15-snap.2114-T1
Valid prediction for GeneMark_model.64793_t
Valid prediction for GeneMark_model.64734_t
Valid prediction for GlimmerHMM_glimmerT_37630-T1
Valid prediction for GeneMark_model.64781_t
Valid prediction for HiQ_model.g25229.t1
Valid prediction for GeneMark_model.64770_t
Valid prediction for GeneMark_model.64765_t
Valid prediction for GeneMark_model.64768_t
Valid prediction for snap_scaffold_15-snap.2125-T1
Valid prediction for GlimmerHMM_glimmerT_37617-T1
Valid prediction for Augustus_model.g25236.t1
Valid prediction for snap_scaffold_15-snap.2122-T1
Valid prediction for GeneMark_model.64744_t
Valid prediction for snap_scaffold_15-snap.2131-T1
Valid prediction for GeneMark_model.64763_t
Couldn't classify 153462, 153827
Sorry, prediction pasa_asmbl_14395.p1 fails validation.
(GAG)	 TG	153462-153827	GT	AGG
(GTG)	 AG	153921-154139	CC	AAC
-recovered pasa_asmbl_14395.p1, terminal, 153921, 154139
Couldn't classify 151992, 152681
Sorry, prediction pasa_asmbl_14393.p1 fails validation.
(CCA)	 CG	151992-152681	TC	GGT
Valid prediction for Augustus_model.g25218.t1
Valid prediction for snap_scaffold_15-snap.2103-T1
Valid prediction for GeneMark_model.64732_t
Valid prediction for snap_scaffold_15-snap.2145-T1
Valid prediction for GlimmerHMM_glimmerT_37622-T1
Valid prediction for GeneMark_model.64798_t
Valid prediction for Augustus_model.g25234.t1
Valid prediction for snap_scaffold_15-snap.2110-T1
Valid prediction for GlimmerHMM_glimmerT_37623-T1
Valid prediction for snap_scaffold_15-snap.2139-T1
Valid prediction for snap_scaffold_15-snap.2107-T1
Valid prediction for GeneMark_model.64779_t
Valid prediction for GeneMark_model.64797_t
Valid prediction for pasa_asmbl_14392.p1
Valid prediction for GeneMark_model.64747_t
Valid prediction for GlimmerHMM_glimmerT_37615-T1
Valid prediction for snap_scaffold_15-snap.2124-T1
Valid prediction for GeneMark_model.64737_t
Valid prediction for GeneMark_model.64748_t
Valid prediction for GeneMark_model.64802_t
Valid prediction for GeneMark_model.64754_t
Valid prediction for GlimmerHMM_glimmerT_37628-T1
Valid prediction for GeneMark_model.64787_t
Couldn't classify 164158, 164333
Sorry, prediction pasa_asmbl_14396.p1 fails validation.
(ATG)	 CA	163200-163446	GT	AGG
(GCA)	 AG	164158-164333	TG	GGT
-recovered pasa_asmbl_14396.p1, initial, 163200, 163446
Valid prediction for snap_scaffold_15-snap.2105-T1
Valid prediction for GeneMark_model.64750_t
Valid prediction for snap_scaffold_15-snap.2118-T1
Couldn't classify 152859, 153287
Sorry, prediction pasa_asmbl_14394.p1 fails validation.
(CAT)	 GG	152859-153287	AC	GTA
Valid prediction for snap_scaffold_15-snap.2113-T1
Valid prediction for snap_scaffold_15-snap.2119-T1
Valid prediction for snap_scaffold_15-snap.2111-T1
Valid prediction for snap_scaffold_15-snap.2134-T1
Valid prediction for GeneMark_model.64795_t
Valid prediction for snap_scaffold_15-snap.2106-T1
Valid prediction for GlimmerHMM_glimmerT_37631-T1
Valid prediction for snap_scaffold_15-snap.2141-T1
Valid prediction for snap_scaffold_15-snap.2115-T1
Valid prediction for GeneMark_model.64777_t
Valid prediction for GeneMark_model.64746_t
Valid prediction for snap_scaffold_15-snap.2144-T1
Valid prediction for Augustus_model.g25231.t1
Valid prediction for GeneMark_model.64741_t
Valid prediction for GeneMark_model.64808_t
Valid prediction for GeneMark_model.64755_t
Valid prediction for snap_scaffold_15-snap.2116-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.64759_t
Valid prediction for GlimmerHMM_glimmerT_37625-T1
Valid prediction for GeneMark_model.64756_t
Valid prediction for GeneMark_model.64760_t
Valid prediction for GeneMark_model.64775_t
Valid prediction for GeneMark_model.64745_t
Valid prediction for GeneMark_model.64752_t
Valid prediction for snap_scaffold_15-snap.2112-T1
Valid prediction for GeneMark_model.64778_t
Valid prediction for Augustus_model.g25216.t1
Valid prediction for GeneMark_model.64762_t
Valid prediction for GeneMark_model.64784_t
Valid prediction for Augustus_model.g25223.t1
Valid prediction for Augustus_model.g25232.t1
Valid prediction for GeneMark_model.64796_t
Valid prediction for snap_scaffold_15-snap.2146-T1
Valid prediction for GeneMark_model.64805_t
Valid prediction for GeneMark_model.64766_t
Valid prediction for snap_scaffold_15-snap.2121-T1
Valid prediction for snap_scaffold_15-snap.2117-T1
Valid prediction for GeneMark_model.64733_t
Valid prediction for snap_scaffold_15-snap.2132-T1
Valid prediction for snap_scaffold_15-snap.2108-T1
Valid prediction for GeneMark_model.64774_t
Valid prediction for GlimmerHMM_glimmerT_37610-T1
Valid prediction for snap_scaffold_15-snap.2127-T1
Valid prediction for GeneMark_model.64788_t
Valid prediction for GlimmerHMM_glimmerT_37613-T1
Valid prediction for GlimmerHMM_glimmerT_37621-T1
Valid prediction for GeneMark_model.64749_t
Valid prediction for GlimmerHMM_glimmerT_37634-T1
Valid prediction for Augustus_model.g25228.t1
Valid prediction for GeneMark_model.64783_t
Valid prediction for snap_scaffold_15-snap.2123-T1
Valid prediction for snap_scaffold_15-snap.2143-T1
Valid prediction for snap_scaffold_15-snap.2140-T1
Valid prediction for snap_scaffold_15-snap.2137-T1
Valid prediction for GeneMark_model.64736_t
Valid prediction for Augustus_model.g25237.t1
Valid prediction for GeneMark_model.64780_t
Valid prediction for GeneMark_model.64786_t
Valid prediction for snap_scaffold_15-snap.2128-T1
Valid prediction for GeneMark_model.64740_t
Valid prediction for GeneMark_model.64753_t
Valid prediction for Augustus_model.g25225.t1
Valid prediction for Augustus_model.g25220.t1
Valid prediction for Augustus_model.g25227.t1
Valid prediction for GlimmerHMM_glimmerT_37629-T1
Valid prediction for GeneMark_model.64739_t
Valid prediction for GeneMark_model.64801_t
Valid prediction for GeneMark_model.64790_t
Couldn't classify 16123, 16186
Sorry, prediction pasa_asmbl_15447.p1 fails validation.
(AGT)	 CC	16123-16186	GT	TGG
(CCG)	 AG	16810-16884	GT	CTG
(TGG)	 AG	19530-19731	GT	ACG
(TGG)	 AG	20141-20226	GT	ATG
(ACT)	 AG	22398-22555	GT	ACG
(GTA)	 AG	24361-24527	GT	AGG
(GTA)	 AG	25983-26094	GT	CGG
(ACT)	 AG	27994-28134	GT	GAG
-recovered pasa_asmbl_15447.p1, terminal, 27994, 28134
-recovered pasa_asmbl_15447.p1, internal, 16810, 16884
-recovered pasa_asmbl_15447.p1, internal, 19530, 19731
-recovered pasa_asmbl_15447.p1, internal, 20141, 20226
-recovered pasa_asmbl_15447.p1, internal, 22398, 22555
-recovered pasa_asmbl_15447.p1, internal, 24361, 24527
-recovered pasa_asmbl_15447.p1, internal, 25983, 26094
-recovered pasa_asmbl_15447.p1, internal, 27994, 28134
Valid prediction for GeneMark_model.64743_t
Valid prediction for GlimmerHMM_glimmerT_37624-T1
Valid prediction for GeneMark_model.64794_t
Valid prediction for GeneMark_model.64764_t
Valid prediction for snap_scaffold_15-snap.2136-T1
Valid prediction for snap_scaffold_15-snap.2126-T1
Valid prediction for snap_scaffold_15-snap.2135-T1
Valid prediction for GlimmerHMM_glimmerT_37633-T1
Valid prediction for Augustus_model.g25222.t1
Valid prediction for GlimmerHMM_glimmerT_37619-T1
Valid prediction for GlimmerHMM_glimmerT_37620-T1
Valid prediction for Augustus_model.g25221.t1
Valid prediction for snap_scaffold_15-snap.2102-T1
Valid prediction for snap_scaffold_15-snap.2129-T1
Valid prediction for GeneMark_model.64782_t
Valid prediction for GeneMark_model.64803_t
Valid prediction for snap_scaffold_15-snap.2138-T1
Valid prediction for GeneMark_model.64776_t
Valid prediction for GlimmerHMM_glimmerT_37627-T1
Valid prediction for GeneMark_model.64772_t
Valid prediction for Augustus_model.g25224.t1
Valid prediction for GeneMark_model.64807_t
Valid prediction for GeneMark_model.64809_t
Valid prediction for snap_scaffold_15-snap.2142-T1
Valid prediction for GlimmerHMM_glimmerT_37614-T1
Valid prediction for GeneMark_model.64792_t
Valid prediction for Augustus_model.g25230.t1
Valid prediction for GeneMark_model.64735_t
Valid prediction for Augustus_model.g25235.t1
Valid prediction for GeneMark_model.64758_t
Valid prediction for GlimmerHMM_glimmerT_37618-T1
Valid prediction for GeneMark_model.64799_t
Valid prediction for GlimmerHMM_glimmerT_37611-T1
Valid prediction for snap_scaffold_15-snap.2133-T1
Valid prediction for Augustus_model.g25226.t1
Valid prediction for GeneMark_model.64769_t
Valid prediction for GlimmerHMM_glimmerT_37626-T1
Valid prediction for Augustus_model.g25217.t1
Valid prediction for GeneMark_model.64742_t
Valid prediction for snap_scaffold_15-snap.2109-T1
Valid prediction for GeneMark_model.64751_t
Valid prediction for Augustus_model.g25233.t1
Valid prediction for snap_scaffold_15-snap.2130-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 29026, rend_intergenic: 5577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33933, rend_intergenic: 30068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42508, rend_intergenic: 35214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51283, rend_intergenic: 47241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77548, rend_intergenic: 56568  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80483, rend_intergenic: 77942  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82056, rend_intergenic: 80757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105249, rend_intergenic: 82291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199242, rend_intergenic: 195210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205445, rend_intergenic: 204272  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213510, rend_intergenic: 205584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231888, rend_intergenic: 217519  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 240330, rend_intergenic: 231922  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 246080
-exon list size: 847


building trellis

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73.4    
73.5    
73.6    
73.7    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.3    
75.4    
75.5    
75.6    
75.7    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.3    
77.4    
77.5    
77.6    
77.7    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.6    
78.7    
78.8    
78.9    
79.0    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.6    
80.7    
80.8    
80.9    
81.0    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.6    
82.7    
82.8    
82.9    
83.0    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.9    
86.0    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.5    
87.6    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.5    
89.6    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.2    
91.3    
91.4    
91.5    
91.6    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.5    
92.6    
92.7    
92.8    
92.9    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
94.9    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.5    
96.6    
96.7    
96.8    
96.9    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.8    
97.9    
98.0    
98.1    
98.2    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 37 predictions from path traversal
Error with prediction: snap lend_intergenic: 29026, rend_intergenic: 5577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33933, rend_intergenic: 30068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42508, rend_intergenic: 35214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51283, rend_intergenic: 47241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77548, rend_intergenic: 56568  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80483, rend_intergenic: 77942  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82056, rend_intergenic: 80757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105249, rend_intergenic: 82291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199242, rend_intergenic: 195210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205445, rend_intergenic: 204272  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213510, rend_intergenic: 205584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231888, rend_intergenic: 217519  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 240330, rend_intergenic: 231922  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support