-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1498

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1498-snap.2-T1
Valid prediction for Augustus_model.g41700.t1
add_exon() Sorry, Augustus_model.g41700.t1 463-584-terminal-1 is invalid.
Couldn't classify 2061, 2153
Sorry, prediction GlimmerHMM_glimmerT_62676-T1 fails validation.
(ATG)	 AG	1510-1534	GT	AGG
(GTC)	 AG	2061-2153	GT	CGG
-recovered GlimmerHMM_glimmerT_62676-T1, initial, 1510, 1534
-recovered GlimmerHMM_glimmerT_62676-T1, internal, 1510, 1534
-recovered GlimmerHMM_glimmerT_62676-T1, internal, 2061, 2153
Couldn't classify 474, 580
Couldn't classify 2067, 2153
Sorry, prediction GeneMark_model.109402_t fails validation.
(CGA)	 AG	474-580	GT	GTG
(TGC)	 AG	625-663	GT	CTG
(AGA)	 AG	1221-1229	GT	GAG
(CGT)	 AG	1315-1346	GT	GGG
(GCA)	 AG	2067-2153	GT	CGG
-recovered GeneMark_model.109402_t, internal, 474, 580
-recovered GeneMark_model.109402_t, internal, 625, 663
-recovered GeneMark_model.109402_t, internal, 1221, 1229
-recovered GeneMark_model.109402_t, internal, 1315, 1346
-recovered GeneMark_model.109402_t, internal, 2067, 2153

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 165, 248
Sorry, prediction snap_scaffold_1498-snap.1-T1 fails validation.
(AGC)	 AG	165-248	GT	GGG
(AGG)	 AG	1752-1891	AA	AGA
-recovered snap_scaffold_1498-snap.1-T1, terminal, 1752, 1891
-recovered snap_scaffold_1498-snap.1-T1, internal, 165, 248

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2160, rend_intergenic: 577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2324
-exon list size: 23


building trellis

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-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2160, rend_intergenic: 577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support