-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1496

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 304, 314
Couldn't classify 1743, 1748
Sorry, prediction GeneMark_model.109401_t fails validation.
(GGA)	 AG	304-314	GT	AGG
(GGA)	 AG	333-343	GT	AGG
(GGA)	 AG	364-374	GT	AGG
(GGA)	 AG	397-407	GT	ATG
(AGC)	 AG	1021-1116	GT	AGG
(CGA)	 AG	1522-1581	GT	GGG
(GTG)	 AG	1743-1748	GT	GGG
-recovered GeneMark_model.109401_t, internal, 304, 314
-recovered GeneMark_model.109401_t, internal, 333, 343
-recovered GeneMark_model.109401_t, internal, 364, 374
-recovered GeneMark_model.109401_t, internal, 397, 407
-recovered GeneMark_model.109401_t, internal, 1021, 1116
-recovered GeneMark_model.109401_t, internal, 1522, 1581
-recovered GeneMark_model.109401_t, internal, 1743, 1748

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2329
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support