-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1494

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 606, 625
Couldn't classify 2140, 2325
Sorry, prediction GeneMark_model.109399_t fails validation.
(ACA)	 AG	606-625	GT	AGG
(GGG)	 AG	652-660	GT	GGG
(GGT)	 AG	688-702	GT	GGG
(GTT)	 AG	730-744	GT	GGG
(AGG)	 AG	769-792	GT	GGG
(TAG)	 AG	822-848	GT	GGG
(GCA)	 AG	870-890	GT	GGG
(GGG)	 AG	1150-1215	GT	GGG
(GGA)	 AG	1238-1252	GT	GGG
(GGA)	 AG	1275-1289	GT	GGG
(GGA)	 AG	1312-1326	GT	GGG
(GCA)	 AG	1353-1367	GT	GAG
(GGG)	 AG	2097-2117	GT	GGG
(GGG)	 AG	2140-2325	GC	AGG
-recovered GeneMark_model.109399_t, internal, 606, 625
-recovered GeneMark_model.109399_t, internal, 652, 660
-recovered GeneMark_model.109399_t, internal, 688, 702
-recovered GeneMark_model.109399_t, internal, 730, 744
-recovered GeneMark_model.109399_t, internal, 769, 792
-recovered GeneMark_model.109399_t, internal, 822, 848
-recovered GeneMark_model.109399_t, internal, 870, 890
-recovered GeneMark_model.109399_t, internal, 1150, 1215
-recovered GeneMark_model.109399_t, internal, 1238, 1252
-recovered GeneMark_model.109399_t, internal, 1275, 1289
-recovered GeneMark_model.109399_t, internal, 1312, 1326
-recovered GeneMark_model.109399_t, internal, 1353, 1367
-recovered GeneMark_model.109399_t, internal, 2097, 2117
-recovered GeneMark_model.109399_t, internal, 2140, 2325

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2337
-exon list size: 23


building trellis

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8.0    
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16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support