-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1492

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1442, 1697
Sorry, prediction snap_scaffold_1492-snap.2-T1 fails validation.
(GAA)	 AG	1442-1697	GT	GAG
-recovered snap_scaffold_1492-snap.2-T1, internal, 1442, 1697
Valid prediction for GeneMark_model.109397_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1261, 1502
Sorry, prediction GeneMark_model.109396_t fails validation.
(ATG)	 GA	966-973	GT	GTG
(AGG)	 AG	1147-1236	GT	GAG
(AGA)	 AG	1261-1502	GT	CGG
-recovered GeneMark_model.109396_t, initial, 966, 973
-recovered GeneMark_model.109396_t, internal, 1147, 1236
-recovered GeneMark_model.109396_t, internal, 1261, 1502
Couldn't classify 1107, 1502
Sorry, prediction snap_scaffold_1492-snap.1-T1 fails validation.
(GGG)	 AG	1107-1502	GT	CGG
-recovered snap_scaffold_1492-snap.1-T1, internal, 1107, 1502

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2339
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support