-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1490

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 441, 510
Couldn't classify 2218, 2290
Sorry, prediction Augustus_model.g41699.t1 fails validation.
(GTG)	 AG	441-510	GT	AGG
(GAA)	 AG	623-770	GT	AGG
(GAA)	 AG	970-1155	GT	AGG
(GTG)	 AG	1368-1506	GT	TGG
(CGT)	 AG	1637-1722	GT	AGG
(GTG)	 AG	1847-1992	GT	GGG
(ACA)	 AG	2218-2290	GT	AGG
-recovered Augustus_model.g41699.t1, internal, 441, 510
-recovered Augustus_model.g41699.t1, internal, 623, 770
-recovered Augustus_model.g41699.t1, internal, 970, 1155
-recovered Augustus_model.g41699.t1, internal, 1368, 1506
-recovered Augustus_model.g41699.t1, internal, 1637, 1722
-recovered Augustus_model.g41699.t1, internal, 1847, 1992
-recovered Augustus_model.g41699.t1, internal, 2218, 2290
Couldn't classify 3, 36
Couldn't classify 2218, 2290
Sorry, prediction pasa_asmbl_13885.p1 fails validation.
(GAT)	 CG	3-36	GT	AGG
(GTG)	 AG	441-510	GT	AGG
(GAA)	 AG	623-770	GT	AGG
(GAA)	 AG	970-1155	GT	AGG
(GTG)	 AG	1368-1506	GT	TGG
(CGT)	 AG	1637-1722	GT	AGG
(GTG)	 AG	1847-1992	GT	GGG
(ACA)	 AG	2218-2290	GT	AGG
-recovered pasa_asmbl_13885.p1, internal, 441, 510
-recovered pasa_asmbl_13885.p1, internal, 623, 770
-recovered pasa_asmbl_13885.p1, internal, 970, 1155
-recovered pasa_asmbl_13885.p1, internal, 1368, 1506
-recovered pasa_asmbl_13885.p1, internal, 1637, 1722
-recovered pasa_asmbl_13885.p1, internal, 1847, 1992
-recovered pasa_asmbl_13885.p1, internal, 2218, 2290
Valid prediction for CodingQuarry_transcript_15938-T1
Couldn't classify 441, 510
Sorry, prediction GlimmerHMM_glimmerT_62675-T1 fails validation.
(GTG)	 AG	441-510	GT	AGG
(GAA)	 AG	623-770	GT	AGG
(GAA)	 AG	970-1155	GT	AGG
(GTG)	 AG	1368-1506	GT	TGG
(CGT)	 AG	1637-1722	GT	AGG
(GTG)	 AG	1847-1996	GG	AGG
-recovered GlimmerHMM_glimmerT_62675-T1, terminal, 1847, 1996
-recovered GlimmerHMM_glimmerT_62675-T1, internal, 441, 510
-recovered GlimmerHMM_glimmerT_62675-T1, internal, 623, 770
-recovered GlimmerHMM_glimmerT_62675-T1, internal, 970, 1155
-recovered GlimmerHMM_glimmerT_62675-T1, internal, 1368, 1506
-recovered GlimmerHMM_glimmerT_62675-T1, internal, 1637, 1722
Couldn't classify 441, 510
Couldn't classify 2218, 2290
Sorry, prediction snap_scaffold_1490-snap.1-T1 fails validation.
(GTG)	 AG	441-510	GT	AGG
(GAA)	 AG	623-770	GT	AGG
(GAA)	 AG	970-1155	GT	AGG
(GTG)	 AG	1368-1506	GT	TGG
(CGT)	 AG	1637-1722	GT	AGG
(GTG)	 AG	1847-1992	GT	GGG
(ACA)	 AG	2218-2290	GT	AGG
-recovered snap_scaffold_1490-snap.1-T1, internal, 441, 510
-recovered snap_scaffold_1490-snap.1-T1, internal, 623, 770
-recovered snap_scaffold_1490-snap.1-T1, internal, 970, 1155
-recovered snap_scaffold_1490-snap.1-T1, internal, 1368, 1506
-recovered snap_scaffold_1490-snap.1-T1, internal, 1637, 1722
-recovered snap_scaffold_1490-snap.1-T1, internal, 1847, 1992
-recovered snap_scaffold_1490-snap.1-T1, internal, 2218, 2290
Couldn't classify 18, 36
Couldn't classify 2218, 2290
Sorry, prediction GeneMark_model.109394_t fails validation.
(TGG)	 AG	18-36	GT	AGG
(GGG)	 AG	111-177	GT	ATG
(GTG)	 AG	441-510	GT	AGG
(GAA)	 AG	623-770	GT	AGG
(GAA)	 AG	970-1155	GT	AGG
(GTG)	 AG	1368-1506	GT	TGG
(CGT)	 AG	1637-1722	GT	AGG
(GTG)	 AG	1847-1992	GT	GGG
(GTC)	 AG	2026-2124	GT	GGG
(ACA)	 AG	2218-2290	GT	AGG
-recovered GeneMark_model.109394_t, internal, 18, 36
-recovered GeneMark_model.109394_t, internal, 111, 177
-recovered GeneMark_model.109394_t, internal, 441, 510
-recovered GeneMark_model.109394_t, internal, 623, 770
-recovered GeneMark_model.109394_t, internal, 970, 1155
-recovered GeneMark_model.109394_t, internal, 1368, 1506
-recovered GeneMark_model.109394_t, internal, 1637, 1722
-recovered GeneMark_model.109394_t, internal, 1847, 1992
-recovered GeneMark_model.109394_t, internal, 2026, 2124
-recovered GeneMark_model.109394_t, internal, 2218, 2290

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2344
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support