-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_149

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 109, 721
Sorry, prediction Augustus_model.g40835.t1 fails validation.
(GCA)	 AG	109-721	GT	AGG
(ATG)	 AG	920-1195	TA	AGT
-recovered Augustus_model.g40835.t1, terminal, 920, 1195
-recovered Augustus_model.g40835.t1, internal, 109, 721
Couldn't classify 5, 913
Sorry, prediction pasa_asmbl_13884.p1 fails validation.
(GTT)	 TG	5-913	CC	AGC
Couldn't classify 15, 278
Sorry, prediction GeneMark_model.106742_t fails validation.
(TCT)	 AG	15-278	GT	GTG
(ACG)	 AG	329-576	GT	AAG
(GCG)	 AG	599-721	GT	AGG
(TTT)	 AG	926-1024	GT	GGG
(GCC)	 AG	1051-1171	GT	TTG
(ACC)	 AG	1480-1737	AA	AAA
-recovered GeneMark_model.106742_t, terminal, 1480, 1737
-recovered GeneMark_model.106742_t, internal, 15, 278
-recovered GeneMark_model.106742_t, internal, 329, 576
-recovered GeneMark_model.106742_t, internal, 599, 721
-recovered GeneMark_model.106742_t, internal, 926, 1024
-recovered GeneMark_model.106742_t, internal, 1051, 1171
Couldn't classify 35, 278
Sorry, prediction snap_scaffold_149-snap.1-T1 fails validation.
(GTC)	 AG	35-278	GT	GTG
(ACG)	 AG	329-823	GT	CGG
(ATG)	 AG	920-1171	GT	TTG
(ACC)	 AG	1480-1737	AA	AAA
-recovered snap_scaffold_149-snap.1-T1, initial, 920, 1171
-recovered snap_scaffold_149-snap.1-T1, terminal, 1480, 1737
-recovered snap_scaffold_149-snap.1-T1, internal, 35, 278
-recovered snap_scaffold_149-snap.1-T1, internal, 329, 823
-recovered snap_scaffold_149-snap.1-T1, internal, 920, 1171
Couldn't classify 329, 772
Sorry, prediction GlimmerHMM_glimmerT_61397-T1 fails validation.
(ACG)	 AG	329-772	GT	GAG
(ACC)	 AG	975-1083	GT	CTG
(ACC)	 AG	1480-1775	AA	AAA
-recovered GlimmerHMM_glimmerT_61397-T1, terminal, 1480, 1775
-recovered GlimmerHMM_glimmerT_61397-T1, internal, 329, 772
-recovered GlimmerHMM_glimmerT_61397-T1, internal, 975, 1083

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 12520
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support
	-no exons in range 1 - 10783