-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1488

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62674-T1
Valid prediction for Augustus_model.g41698.t1
Couldn't classify 985, 1234
Sorry, prediction snap_scaffold_1488-snap.1-T1 fails validation.
(ATG)	 AC	878-975	GT	AGG
(AGA)	 AG	985-1234	GT	AGG
-recovered snap_scaffold_1488-snap.1-T1, initial, 878, 975
-recovered snap_scaffold_1488-snap.1-T1, internal, 985, 1234
Sorry, intron length (8) is less than minimum required (10)
Couldn't classify 229, 276
Sorry, prediction GeneMark_model.109393_t fails validation.
(TCT)	 AG	229-276	GT	AGG
(GCA)	 AG	912-923	GT	AGG
(CAC)	 AG	946-975	GT	AGG
(AGA)	 AG	1002-1103	GT	GAG
(AAA)	 AG	1124-1234	GT	AGG
(AGA)	 AG	1258-1321	GG	GAG
-recovered GeneMark_model.109393_t, terminal, 1258, 1321
-recovered GeneMark_model.109393_t, internal, 229, 276
-recovered GeneMark_model.109393_t, internal, 912, 923
-recovered GeneMark_model.109393_t, internal, 946, 975
-recovered GeneMark_model.109393_t, internal, 1002, 1103
-recovered GeneMark_model.109393_t, internal, 1124, 1234

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2349
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support