-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1487

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 753, 805
Couldn't classify 1985, 2172
Sorry, prediction snap_scaffold_1487-snap.1-T1 fails validation.
(AGC)	 AG	753-805	GT	TGG
(GTG)	 AG	1985-2172	GT	AGG
-recovered snap_scaffold_1487-snap.1-T1, internal, 753, 805
-recovered snap_scaffold_1487-snap.1-T1, internal, 1985, 2172
Couldn't classify 753, 802
Sorry, prediction GeneMark_model.109391_t fails validation.
(AGC)	 AG	753-802	GT	AGG
(AGA)	 AG	1105-1335	GT	GAG
(TGA)	 AG	1371-1379	GT	GAG
(AAA)	 AG	1406-1453	GC	GGG
(AGA)	 AG	1511-1564	GT	CAG
(AGG)	 AG	1593-1664	GT	GGG
(GGA)	 AG	1695-1724	GT	GAG
(AGA)	 AG	1748-1756	GT	GAG
(GAT)	 AG	1794-1806	CA	GAC
-recovered GeneMark_model.109391_t, terminal, 1794, 1806
-recovered GeneMark_model.109391_t, internal, 753, 802
-recovered GeneMark_model.109391_t, internal, 1105, 1335
-recovered GeneMark_model.109391_t, internal, 1371, 1379
-recovered GeneMark_model.109391_t, internal, 1406, 1453
-recovered GeneMark_model.109391_t, internal, 1511, 1564
-recovered GeneMark_model.109391_t, internal, 1593, 1664
-recovered GeneMark_model.109391_t, internal, 1695, 1724
-recovered GeneMark_model.109391_t, internal, 1748, 1756
Couldn't classify 289, 362
Sorry, prediction Augustus_model.g41696.t1 fails validation.
(ATC)	 AG	289-362	GT	GGG
(AGC)	 AG	753-815	CA	AAC
-recovered Augustus_model.g41696.t1, terminal, 753, 815
-recovered Augustus_model.g41696.t1, internal, 289, 362

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41697.t1
add_exon() Sorry, Augustus_model.g41697.t1 170-333-terminal-1 is invalid.
Valid prediction for GeneMark_model.109392_t
add_exon() Sorry, GeneMark_model.109392_t 170-333-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62673-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62673-T1 170-333-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2352
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support