-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1485

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62672-T1
Couldn't classify 507, 585
Sorry, prediction snap_scaffold_1485-snap.1-T1 fails validation.
(ATG)	 CA	47-86	GT	AGG
(TCA)	 AG	195-282	GT	GAG
(AAC)	 AG	507-585	GT	AAG
-recovered snap_scaffold_1485-snap.1-T1, initial, 47, 86
-recovered snap_scaffold_1485-snap.1-T1, internal, 195, 282
-recovered snap_scaffold_1485-snap.1-T1, internal, 507, 585
Couldn't classify 9, 18
Couldn't classify 1153, 1236
Sorry, prediction GeneMark_model.109389_t fails validation.
(GAG)	 AG	9-18	GC	GGG
(AAT)	 AG	40-86	GT	AGG
(TCA)	 AG	195-282	GT	GAG
(GGT)	 AG	972-1058	GT	GAG
(GGG)	 AG	1153-1236	GT	TTG
-recovered GeneMark_model.109389_t, internal, 9, 18
-recovered GeneMark_model.109389_t, internal, 40, 86
-recovered GeneMark_model.109389_t, internal, 195, 282
-recovered GeneMark_model.109389_t, internal, 972, 1058
-recovered GeneMark_model.109389_t, internal, 1153, 1236

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2354
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support