-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1484

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 33, 117
Couldn't classify 784, 909
Sorry, prediction GeneMark_model.109388_t fails validation.
(GAG)	 AG	33-117	GT	GGG
(AAG)	 AG	333-364	GT	GGG
(AGG)	 AG	391-531	GT	AGG
(AGA)	 AG	556-567	GT	AGG
(GGG)	 AG	591-608	GT	CAG
(AGA)	 AG	650-760	GC	GAG
(ACA)	 AG	784-909	GT	GGG
-recovered GeneMark_model.109388_t, internal, 33, 117
-recovered GeneMark_model.109388_t, internal, 333, 364
-recovered GeneMark_model.109388_t, internal, 391, 531
-recovered GeneMark_model.109388_t, internal, 556, 567
-recovered GeneMark_model.109388_t, internal, 591, 608
-recovered GeneMark_model.109388_t, internal, 650, 760
-recovered GeneMark_model.109388_t, internal, 784, 909

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2355
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support