-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1483

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 140, 247
Sorry, prediction GeneMark_model.109386_t fails validation.
(CGA)	 AG	140-247	GT	AGG
(AGA)	 AG	332-362	AG	AAA
-recovered GeneMark_model.109386_t, terminal, 332, 362
-recovered GeneMark_model.109386_t, internal, 140, 247
Valid prediction for GeneMark_model.109387_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1284, 1633
Sorry, prediction snap_scaffold_1483-snap.1-T1 fails validation.
(ATG)	 TG	936-1123	GT	CGG
(TCA)	 AG	1284-1633	GT	AAG
-recovered snap_scaffold_1483-snap.1-T1, initial, 936, 1123
-recovered snap_scaffold_1483-snap.1-T1, internal, 1284, 1633
Valid prediction for Augustus_model.g41695.t1
Valid prediction for GlimmerHMM_glimmerT_62671-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2355
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support