-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1482

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 938, 1121
Sorry, prediction Augustus_model.g41694.t1 fails validation.
(GGC)	 AG	938-1121	GT	TCG
(GAA)	 AG	1268-1514	GT	GCG
(ATT)	 AG	2180-2305	TG	AAT
-recovered Augustus_model.g41694.t1, terminal, 2180, 2305
-recovered Augustus_model.g41694.t1, internal, 938, 1121
-recovered Augustus_model.g41694.t1, internal, 1268, 1514
Valid prediction for GeneMark_model.109384_t
Valid prediction for GlimmerHMM_glimmerT_62670-T1
Couldn't classify 938, 1121
Sorry, prediction snap_scaffold_1482-snap.1-T1 fails validation.
(GGC)	 AG	938-1121	GT	TCG
(GAA)	 AG	1268-1742	AG	GAA
-recovered snap_scaffold_1482-snap.1-T1, terminal, 1268, 1742
-recovered snap_scaffold_1482-snap.1-T1, internal, 938, 1121

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109385_t
Valid prediction for snap_scaffold_1482-snap.2-T1
add_exon() Sorry, snap_scaffold_1482-snap.2-T1 56-260-terminal-1 is invalid.
Couldn't classify 2296, 2327
Sorry, prediction GeneMark_model.109383_t fails validation.
(ATG)	 CC	1292-1366	GT	GAG
(GCA)	 AG	1414-1460	GT	GGG
(ACT)	 AG	1503-1574	GT	TCG
(CAA)	 AG	2084-2165	GT	TGG
(AAG)	 AG	2296-2327	GT	GGG
-recovered GeneMark_model.109383_t, initial, 1292, 1366
-recovered GeneMark_model.109383_t, internal, 1414, 1460
-recovered GeneMark_model.109383_t, internal, 1503, 1574
-recovered GeneMark_model.109383_t, internal, 2084, 2165
-recovered GeneMark_model.109383_t, internal, 2296, 2327

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2356
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 2 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support