-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1481

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 43, 668
Couldn't classify 1710, 1814
Sorry, prediction snap_scaffold_1481-snap.1-T1 fails validation.
(ATA)	 AG	43-668	GT	CGG
(CAG)	 AG	1710-1814	GT	AGG
-recovered snap_scaffold_1481-snap.1-T1, internal, 43, 668
-recovered snap_scaffold_1481-snap.1-T1, internal, 1710, 1814
Valid prediction for GlimmerHMM_glimmerT_62669-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62669-T1 169-680-terminal-1 is invalid.
Valid prediction for Augustus_model.g41693.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2356
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support