-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1480

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62668-T1
Couldn't classify 1714, 1754
Couldn't classify 2225, 2347
Sorry, prediction GeneMark_model.109382_t fails validation.
(GCA)	 AG	1714-1754	GT	AGG
(AAA)	 AG	2110-2180	GT	ATG
(AGG)	 AG	2225-2347	GC	AGG
-recovered GeneMark_model.109382_t, internal, 1714, 1754
-recovered GeneMark_model.109382_t, internal, 2110, 2180
-recovered GeneMark_model.109382_t, internal, 2225, 2347

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2359
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support