-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1479

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62667-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62667-T1 1325-1503-terminal-1 is invalid.
Valid prediction for Augustus_model.g41692.t1
add_exon() Sorry, Augustus_model.g41692.t1 1325-1503-terminal-1 is invalid.
Valid prediction for snap_scaffold_1479-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 261, 463
Couldn't classify 2289, 2330
Sorry, prediction GeneMark_model.109381_t fails validation.
(CCA)	 AG	261-463	GT	AGG
(GGC)	 AG	750-974	GT	CGG
(CGA)	 AG	1078-1143	GT	AGG
(GCG)	 AG	1169-1315	GT	AGG
(AGA)	 AG	1432-1455	GT	AAG
(AGT)	 AG	2289-2330	GT	AGG
-recovered GeneMark_model.109381_t, internal, 261, 463
-recovered GeneMark_model.109381_t, internal, 750, 974
-recovered GeneMark_model.109381_t, internal, 1078, 1143
-recovered GeneMark_model.109381_t, internal, 1169, 1315
-recovered GeneMark_model.109381_t, internal, 1432, 1455
-recovered GeneMark_model.109381_t, internal, 2289, 2330

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2360
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support