-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1476

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 507, 629
Couldn't classify 1593, 1676
Sorry, prediction GeneMark_model.109379_t fails validation.
(TGG)	 AG	507-629	GT	CAG
(ACA)	 AG	651-819	GT	GAG
(AGA)	 AG	979-1076	GT	GGG
(AGG)	 AG	1207-1221	GT	GGG
(AGT)	 AG	1593-1676	GT	GGG
-recovered GeneMark_model.109379_t, internal, 507, 629
-recovered GeneMark_model.109379_t, internal, 651, 819
-recovered GeneMark_model.109379_t, internal, 979, 1076
-recovered GeneMark_model.109379_t, internal, 1207, 1221
-recovered GeneMark_model.109379_t, internal, 1593, 1676
Couldn't classify 130, 251
Couldn't classify 1593, 1676
Sorry, prediction Augustus_model.g41691.t1 fails validation.
(AAG)	 AG	130-251	GT	TGG
(AGT)	 AG	1593-1676	GT	GGG
-recovered Augustus_model.g41691.t1, internal, 130, 251
-recovered Augustus_model.g41691.t1, internal, 1593, 1676

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2363
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support