-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1475

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1463, 1749
Couldn't classify 2035, 2314
Sorry, prediction snap_scaffold_1475-snap.1-T1 fails validation.
(AAG)	 AG	1463-1749	GT	CGG
(GAA)	 AG	2035-2314	GT	AGG
-recovered snap_scaffold_1475-snap.1-T1, internal, 1463, 1749
-recovered snap_scaffold_1475-snap.1-T1, internal, 2035, 2314
Valid prediction for GlimmerHMM_glimmerT_62665-T1
Couldn't classify 635, 649
Sorry, prediction GeneMark_model.109378_t fails validation.
(AGA)	 AG	635-649	GT	GAG
(AGA)	 AG	682-708	GC	GAG
(AGA)	 AG	730-816	GT	AGG
(AGC)	 AG	846-867	TG	AGT
-recovered GeneMark_model.109378_t, terminal, 846, 867
-recovered GeneMark_model.109378_t, internal, 635, 649
-recovered GeneMark_model.109378_t, internal, 682, 708
-recovered GeneMark_model.109378_t, internal, 730, 816
Couldn't classify 2179, 2314
Sorry, prediction GeneMark_model.109377_t fails validation.
(ATG)	 TG	1478-1749	GT	CGG
(ACA)	 AG	1778-1933	GT	AGG
(GAG)	 AG	1956-2030	GT	AGG
(GAC)	 AG	2179-2314	GT	AGG
-recovered GeneMark_model.109377_t, initial, 1478, 1749
-recovered GeneMark_model.109377_t, internal, 1778, 1933
-recovered GeneMark_model.109377_t, internal, 1956, 2030
-recovered GeneMark_model.109377_t, internal, 2179, 2314

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2363
-exon list size: 18


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support