-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1474

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62664-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62664-T1 1083-1339-terminal-1 is invalid.
Couldn't classify 40, 46
Sorry, prediction GeneMark_model.109376_t fails validation.
(GAG)	 AG	40-46	GT	AGG
(CAG)	 AG	797-824	GT	CAG
(AGG)	 AG	859-931	GT	TGG
(GAG)	 AG	971-1036	GT	ATG
(ACG)	 AG	1126-1339	AC	GAA
-recovered GeneMark_model.109376_t, terminal, 1126, 1339
-recovered GeneMark_model.109376_t, internal, 40, 46
-recovered GeneMark_model.109376_t, internal, 797, 824
-recovered GeneMark_model.109376_t, internal, 859, 931
-recovered GeneMark_model.109376_t, internal, 971, 1036

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 706, 807
Sorry, prediction snap_scaffold_1474-snap.1-T1 fails validation.
(AGG)	 AG	706-807	GT	TTG
(GCG)	 AG	1030-1268	GT	AGG
(CCC)	 AG	1768-1813	GC	AGG
-recovered snap_scaffold_1474-snap.1-T1, terminal, 1768, 1813
-recovered snap_scaffold_1474-snap.1-T1, internal, 706, 807
-recovered snap_scaffold_1474-snap.1-T1, internal, 1030, 1268
-recovered snap_scaffold_1474-snap.1-T1, internal, 1768, 1813

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2364
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support