-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1472

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1373, 1428
Couldn't classify 2250, 2352
Sorry, prediction GeneMark_model.109374_t fails validation.
(AGG)	 AG	1373-1428	GT	AGG
(GGT)	 AG	1874-1959	GT	GGG
(GGC)	 AG	2250-2352	GT	TTG
-recovered GeneMark_model.109374_t, internal, 1373, 1428
-recovered GeneMark_model.109374_t, internal, 1874, 1959
-recovered GeneMark_model.109374_t, internal, 2250, 2352
Couldn't classify 1373, 1428
Couldn't classify 2250, 2352
Sorry, prediction snap_scaffold_1472-snap.1-T1 fails validation.
(AGG)	 AG	1373-1428	GT	AGG
(GGT)	 AG	1874-1959	GT	GGG
(GGC)	 AG	2250-2352	GT	TTG
-recovered snap_scaffold_1472-snap.1-T1, internal, 1373, 1428
-recovered snap_scaffold_1472-snap.1-T1, internal, 1874, 1959
-recovered snap_scaffold_1472-snap.1-T1, internal, 2250, 2352
Couldn't classify 2250, 2370
Sorry, prediction Augustus_model.g41690.t1 fails validation.
(ATG)	 CC	738-747	GT	TGG
(AGG)	 AG	1373-1428	GT	AGG
(GGT)	 AG	1874-1959	GT	GGG
(GGC)	 AG	2250-2370		TC
-recovered Augustus_model.g41690.t1, initial, 738, 747
-recovered Augustus_model.g41690.t1, internal, 1373, 1428
-recovered Augustus_model.g41690.t1, internal, 1874, 1959
Couldn't classify 1373, 1428
Sorry, prediction GlimmerHMM_glimmerT_62663-T1 fails validation.
(AGG)	 AG	1373-1428	GT	AGG
(GGT)	 AG	1874-1963	GT	GAG
-recovered GlimmerHMM_glimmerT_62663-T1, terminal, 1874, 1963
-recovered GlimmerHMM_glimmerT_62663-T1, internal, 1373, 1428
-recovered GlimmerHMM_glimmerT_62663-T1, internal, 1874, 1963

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2370
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support