-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1471

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62662-T1
Couldn't classify 1030, 1116
Sorry, prediction Augustus_model.g41689.t1 fails validation.
(TTG)	 AG	1030-1116	GT	TGG
(TTG)	 AG	1288-1593	TT	AAT
-recovered Augustus_model.g41689.t1, terminal, 1288, 1593
-recovered Augustus_model.g41689.t1, internal, 1030, 1116
Couldn't classify 1030, 1116
Sorry, prediction pasa_asmbl_13877.p1 fails validation.
(TTG)	 AG	1030-1116	GT	TGG
(TTG)	 AG	1288-1593	TT	AAT
-recovered pasa_asmbl_13877.p1, terminal, 1288, 1593
-recovered pasa_asmbl_13877.p1, internal, 1030, 1116
Couldn't classify 1030, 1116
Sorry, prediction GeneMark_model.109373_t fails validation.
(TTG)	 AG	1030-1116	GT	TGG
(TTG)	 AG	1288-1589	GT	ATG
(AGA)	 AG	2136-2163	AC	GAA
-recovered GeneMark_model.109373_t, terminal, 2136, 2163
-recovered GeneMark_model.109373_t, internal, 1030, 1116
-recovered GeneMark_model.109373_t, internal, 1288, 1589

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 808, 901
Couldn't classify 2125, 2241
Sorry, prediction snap_scaffold_1471-snap.1-T1 fails validation.
(GAC)	 AG	808-901	GT	AAG
(ACG)	 AG	1072-1119	GT	GTG
(GAC)	 AG	2125-2241	GT	TGG
-recovered snap_scaffold_1471-snap.1-T1, internal, 808, 901
-recovered snap_scaffold_1471-snap.1-T1, internal, 1072, 1119
-recovered snap_scaffold_1471-snap.1-T1, internal, 2125, 2241

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2370
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support