-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1470

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1430, 1705
Couldn't classify 2210, 2352
Sorry, prediction GeneMark_model.109372_t fails validation.
(GTG)	 AG	1430-1705	GT	TGG
(GCT)	 AG	1824-1877	GT	ATG
(GAC)	 AG	2210-2352	GC	ACG
-recovered GeneMark_model.109372_t, internal, 1430, 1705
-recovered GeneMark_model.109372_t, internal, 1824, 1877
-recovered GeneMark_model.109372_t, internal, 2210, 2352
Couldn't classify 1430, 1705
Couldn't classify 2205, 2302
Sorry, prediction Augustus_model.g41688.t1 fails validation.
(GTG)	 AG	1430-1705	GT	TGG
(GCT)	 AG	1824-1877	GT	ATG
(ATT)	 AG	1974-2115	GT	AAG
(GTC)	 AG	2205-2302	GT	ATG
add_exon() Sorry, Augustus_model.g41688.t1 1974-2115-terminal-3 is invalid.
-recovered Augustus_model.g41688.t1, terminal, 1974, 2115
-recovered Augustus_model.g41688.t1, internal, 1430, 1705
-recovered Augustus_model.g41688.t1, internal, 1824, 1877
-recovered Augustus_model.g41688.t1, internal, 1974, 2115
-recovered Augustus_model.g41688.t1, internal, 2205, 2302
Valid prediction for GlimmerHMM_glimmerT_62661-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1470-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2371
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support