-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_147

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106735_t
Couldn't classify 11848, 12041
Sorry, prediction GlimmerHMM_glimmerT_61390-T1 fails validation.
(ATG)	 CG	10169-10197	GT	AAG
(TAG)	 AG	11848-12041	GT	GGG
-recovered GlimmerHMM_glimmerT_61390-T1, initial, 10169, 10197
-recovered GlimmerHMM_glimmerT_61390-T1, internal, 11848, 12041
Valid prediction for GeneMark_model.106734_t
Valid prediction for GeneMark_model.106737_t
Couldn't classify 643, 733
Couldn't classify 11862, 12050
Sorry, prediction snap_scaffold_147-snap.1-T1 fails validation.
(CTC)	 AG	643-733	GT	GGG
(AAA)	 AG	1254-1397	GT	GGG
(GTG)	 AG	1418-1672	GT	CTG
(GTG)	 AG	1970-2087	GT	TGG
(GGT)	 AG	2936-3030	GT	ATG
(GGG)	 AG	4112-4157	GT	AGG
(ACA)	 AG	6074-6206	GT	AGG
(GGG)	 AG	8586-8687	GT	GGG
(TCT)	 AG	10113-10207	GT	CGG
(GGA)	 AG	11862-12050	GT	AGG
-recovered snap_scaffold_147-snap.1-T1, internal, 643, 733
-recovered snap_scaffold_147-snap.1-T1, internal, 1254, 1397
-recovered snap_scaffold_147-snap.1-T1, internal, 1418, 1672
-recovered snap_scaffold_147-snap.1-T1, internal, 1970, 2087
-recovered snap_scaffold_147-snap.1-T1, internal, 2936, 3030
-recovered snap_scaffold_147-snap.1-T1, internal, 4112, 4157
-recovered snap_scaffold_147-snap.1-T1, internal, 6074, 6206
-recovered snap_scaffold_147-snap.1-T1, internal, 8586, 8687
-recovered snap_scaffold_147-snap.1-T1, internal, 10113, 10207
-recovered snap_scaffold_147-snap.1-T1, internal, 11862, 12050
Couldn't classify 515, 623
Sorry, prediction GeneMark_model.106732_t fails validation.
(ATA)	 AG	515-623	GT	ACG
(AAG)	 AG	650-739	GG	GAG
-recovered GeneMark_model.106732_t, terminal, 650, 739
-recovered GeneMark_model.106732_t, internal, 515, 623

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40830.t1
Valid prediction for GeneMark_model.106736_t
Valid prediction for GeneMark_model.106738_t
Valid prediction for GeneMark_model.106733_t
Valid prediction for GlimmerHMM_glimmerT_61389-T1
Couldn't classify 11444, 11659
Sorry, prediction snap_scaffold_147-snap.2-T1 fails validation.
(ATG)	 AT	4715-4749	GT	TGG
(GCT)	 AG	6148-6214	GT	AGG
(AGG)	 AG	7802-7932	GT	TGG
(GTC)	 AG	8343-8638	GT	GGG
(GGT)	 AG	9647-9697	GT	GGG
(GTG)	 AG	10082-10221	GT	AGG
(GAG)	 AG	10532-10642	GT	AGG
(CTT)	 AG	10782-10867	GT	AGG
(CTT)	 AG	10962-11154	GT	AGG
(GAC)	 AG	11444-11659	GT	AGG
-recovered snap_scaffold_147-snap.2-T1, initial, 4715, 4749
-recovered snap_scaffold_147-snap.2-T1, internal, 6148, 6214
-recovered snap_scaffold_147-snap.2-T1, internal, 7802, 7932
-recovered snap_scaffold_147-snap.2-T1, internal, 8343, 8638
-recovered snap_scaffold_147-snap.2-T1, internal, 9647, 9697
-recovered snap_scaffold_147-snap.2-T1, internal, 10082, 10221
-recovered snap_scaffold_147-snap.2-T1, internal, 10532, 10642
-recovered snap_scaffold_147-snap.2-T1, internal, 10782, 10867
-recovered snap_scaffold_147-snap.2-T1, internal, 10962, 11154
-recovered snap_scaffold_147-snap.2-T1, internal, 11444, 11659
Valid prediction for snap_scaffold_147-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12050, rend_intergenic: 940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12598
-exon list size: 88


building trellis

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-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 12050, rend_intergenic: 940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support