-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1469

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2150, 2357
Sorry, prediction snap_scaffold_1469-snap.1-T1 fails validation.
(ATG)	 CC	1840-1850	GT	ATG
(AGG)	 AG	2150-2357	GT	GGG
-recovered snap_scaffold_1469-snap.1-T1, initial, 1840, 1850
-recovered snap_scaffold_1469-snap.1-T1, internal, 2150, 2357
Couldn't classify 670, 699
Couldn't classify 2165, 2350
Sorry, prediction GeneMark_model.109371_t fails validation.
(GAG)	 AG	670-699	GT	ATG
(ACC)	 AG	849-874	GT	GAG
(AAT)	 AG	2165-2350	GC	AAG
-recovered GeneMark_model.109371_t, internal, 670, 699
-recovered GeneMark_model.109371_t, internal, 849, 874
-recovered GeneMark_model.109371_t, internal, 2165, 2350

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2371
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support