-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1468

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 63, 253
Sorry, prediction GeneMark_model.109369_t fails validation.
(CTC)	 AG	63-253	GT	ACG
(GTG)	 AG	682-725	GT	GAG
(GGG)	 AG	1122-1133	GC	GGG
(GGG)	 AG	1156-1369	AG	GAA
-recovered GeneMark_model.109369_t, terminal, 1156, 1369
-recovered GeneMark_model.109369_t, internal, 63, 253
-recovered GeneMark_model.109369_t, internal, 682, 725
-recovered GeneMark_model.109369_t, internal, 1122, 1133
Couldn't classify 63, 253
Sorry, prediction Augustus_model.g41687.t1 fails validation.
(CTC)	 AG	63-253	GT	ACG
(TGT)	 AG	1241-1369	AG	GAA
-recovered Augustus_model.g41687.t1, terminal, 1241, 1369
-recovered Augustus_model.g41687.t1, internal, 63, 253

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62659-T1
Couldn't classify 1902, 2119
Sorry, prediction snap_scaffold_1468-snap.1-T1 fails validation.
(ATG)	 AC	834-841	GT	AGG
(CTT)	 AG	1002-1061	GT	CGG
(GGC)	 AG	1902-2119	GT	ACG
-recovered snap_scaffold_1468-snap.1-T1, initial, 834, 841
-recovered snap_scaffold_1468-snap.1-T1, internal, 1002, 1061
-recovered snap_scaffold_1468-snap.1-T1, internal, 1902, 2119
Valid prediction for GlimmerHMM_glimmerT_62660-T1
Couldn't classify 105, 239
Sorry, prediction GeneMark_model.109370_t fails validation.
(AGA)	 AG	105-239	GT	TGG
(TCA)	 AG	362-448	GT	GCG
(ATG)	 AG	486-607	GT	CTG
(CCT)	 AG	677-756	GC	AAG
add_exon() Sorry, GeneMark_model.109370_t 486-607-initial-1 is invalid.
-recovered GeneMark_model.109370_t, initial, 486, 607
-recovered GeneMark_model.109370_t, terminal, 677, 756
-recovered GeneMark_model.109370_t, internal, 105, 239
-recovered GeneMark_model.109370_t, internal, 362, 448
-recovered GeneMark_model.109370_t, internal, 486, 607
-recovered GeneMark_model.109370_t, internal, 677, 756

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2372
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support