-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1467

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 111, 119
Sorry, prediction GeneMark_model.109367_t fails validation.
(AGC)	 AG	111-119	GT	GAG
(CCG)	 AG	237-296	GC	CGG
(GGA)	 AG	363-537	GT	GAG
-recovered GeneMark_model.109367_t, terminal, 363, 537
-recovered GeneMark_model.109367_t, internal, 111, 119
-recovered GeneMark_model.109367_t, internal, 237, 296
-recovered GeneMark_model.109367_t, internal, 363, 537

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 148, 275
Sorry, prediction GeneMark_model.109368_t fails validation.
(CAG)	 AG	148-275	GT	CAG
(GGT)	 AG	498-637	GT	ATG
(GTT)	 AG	1151-1180	GT	CGG
(GCT)	 AG	1271-1476	AG	GAA
-recovered GeneMark_model.109368_t, terminal, 1271, 1476
-recovered GeneMark_model.109368_t, internal, 148, 275
-recovered GeneMark_model.109368_t, internal, 498, 637
-recovered GeneMark_model.109368_t, internal, 1151, 1180
Valid prediction for GlimmerHMM_glimmerT_62657-T1
Valid prediction for snap_scaffold_1467-snap.2-T1
Couldn't classify 1929, 2113
Sorry, prediction snap_scaffold_1467-snap.1-T1 fails validation.
(ATG)	 CA	1043-1326	GT	ACG
(GTG)	 AG	1929-2113	GT	AGG
-recovered snap_scaffold_1467-snap.1-T1, initial, 1043, 1326
-recovered snap_scaffold_1467-snap.1-T1, internal, 1929, 2113
Valid prediction for Augustus_model.g41686.t1
Couldn't classify 496, 637
Sorry, prediction GlimmerHMM_glimmerT_62658-T1 fails validation.
(AGG)	 AG	496-637	GT	ATG
(ACT)	 AG	1259-1476	AG	GAA
-recovered GlimmerHMM_glimmerT_62658-T1, terminal, 1259, 1476
-recovered GlimmerHMM_glimmerT_62658-T1, internal, 496, 637

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2372
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support