-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1466

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2242, 2370
Sorry, prediction GlimmerHMM_glimmerT_62656-T1 fails validation.
(ATG)	 AG	206-295	GT	AGG
(ATG)	 AG	472-700	GT	AGG
(ACC)	 AG	1173-1318	GT	AGG
(GGT)	 AG	1793-1969	GT	GGG
(CTA)	 AG	2242-2370	GT	GCG
-recovered GlimmerHMM_glimmerT_62656-T1, initial, 206, 295
-recovered GlimmerHMM_glimmerT_62656-T1, initial, 472, 700
-recovered GlimmerHMM_glimmerT_62656-T1, internal, 206, 295
-recovered GlimmerHMM_glimmerT_62656-T1, internal, 472, 700
-recovered GlimmerHMM_glimmerT_62656-T1, internal, 1173, 1318
-recovered GlimmerHMM_glimmerT_62656-T1, internal, 1793, 1969
-recovered GlimmerHMM_glimmerT_62656-T1, internal, 2242, 2370
Couldn't classify 10, 73
Couldn't classify 2242, 2354
Sorry, prediction GeneMark_model.109366_t fails validation.
(ACC)	 AG	10-73	GT	AGG
(AGG)	 AG	181-327	GT	AGG
(CCA)	 AG	480-700	GT	AGG
(ACC)	 AG	1173-1318	GT	AGG
(GGT)	 AG	1793-1969	GT	GGG
(CTA)	 AG	2242-2354	GC	CTG
-recovered GeneMark_model.109366_t, internal, 10, 73
-recovered GeneMark_model.109366_t, internal, 181, 327
-recovered GeneMark_model.109366_t, internal, 480, 700
-recovered GeneMark_model.109366_t, internal, 1173, 1318
-recovered GeneMark_model.109366_t, internal, 1793, 1969
-recovered GeneMark_model.109366_t, internal, 2242, 2354
Couldn't classify 1, 73
Couldn't classify 2242, 2373
Sorry, prediction Augustus_model.g41685.t1 fails validation.
(GCA)	 TC	1-73	GT	AGG
(AGG)	 AG	181-295	GT	AGG
(ATG)	 AG	472-700	GT	AGG
(ACC)	 AG	1173-1318	GT	AGG
(GGT)	 AG	1793-1969	GT	GGG
(CTA)	 AG	2242-2373		TC
-recovered Augustus_model.g41685.t1, initial, 472, 700
-recovered Augustus_model.g41685.t1, internal, 181, 295
-recovered Augustus_model.g41685.t1, internal, 472, 700
-recovered Augustus_model.g41685.t1, internal, 1173, 1318
-recovered Augustus_model.g41685.t1, internal, 1793, 1969
Couldn't classify 2242, 2370
Sorry, prediction snap_scaffold_1466-snap.1-T1 fails validation.
(ATG)	 AC	36-73	GT	AGG
(AGG)	 AG	181-295	GT	AGG
(ATG)	 AG	472-700	GT	AGG
(ACC)	 AG	1173-1318	GT	AGG
(GGT)	 AG	1793-1969	GT	GGG
(CTA)	 AG	2242-2370	GT	GCG
-recovered snap_scaffold_1466-snap.1-T1, initial, 36, 73
-recovered snap_scaffold_1466-snap.1-T1, initial, 472, 700
-recovered snap_scaffold_1466-snap.1-T1, internal, 181, 295
-recovered snap_scaffold_1466-snap.1-T1, internal, 472, 700
-recovered snap_scaffold_1466-snap.1-T1, internal, 1173, 1318
-recovered snap_scaffold_1466-snap.1-T1, internal, 1793, 1969
-recovered snap_scaffold_1466-snap.1-T1, internal, 2242, 2370
Couldn't classify 188, 295
Couldn't classify 2242, 2358
Sorry, prediction pasa_asmbl_13874.p1 fails validation.
(ATC)	 CC	188-295	GT	AGG
(ATG)	 AG	472-700	GT	AGG
(ACC)	 AG	1173-1318	GT	AGG
(GGT)	 AG	1793-1969	GT	GGG
(CTA)	 AG	2242-2358	AC	TCA
-recovered pasa_asmbl_13874.p1, initial, 472, 700
-recovered pasa_asmbl_13874.p1, internal, 472, 700
-recovered pasa_asmbl_13874.p1, internal, 1173, 1318
-recovered pasa_asmbl_13874.p1, internal, 1793, 1969

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2373
-exon list size: 18


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support