-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1462

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109362_t
Valid prediction for snap_scaffold_1462-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62655-T1
Couldn't classify 2353, 2375
Sorry, prediction GeneMark_model.109361_t fails validation.
(ATG)	 TG	1471-1523	GT	GAG
(GGG)	 AG	1546-1639	GT	TGG
(AAG)	 AG	1672-1709	GT	CAG
(TGA)	 AG	1775-1781	GT	AGG
(TCC)	 AG	2312-2326	GT	TGG
(TCC)	 AG	2353-2375	GT	CAG
-recovered GeneMark_model.109361_t, initial, 1471, 1523
-recovered GeneMark_model.109361_t, internal, 1546, 1639
-recovered GeneMark_model.109361_t, internal, 1672, 1709
-recovered GeneMark_model.109361_t, internal, 1775, 1781
-recovered GeneMark_model.109361_t, internal, 2312, 2326
-recovered GeneMark_model.109361_t, internal, 2353, 2375

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2383
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support