-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1461

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 147, 156
Sorry, prediction GeneMark_model.109360_t fails validation.
(CGG)	 AG	147-156	GT	CAG
(GCC)	 AG	374-428	GT	GTG
(GTT)	 AG	1865-1973	GT	GAG
(GAT)	 AG	2064-2111	GT	ATG
(AGA)	 AG	2139-2159	GT	GGG
(AGA)	 AG	2199-2376	GG	GAG
-recovered GeneMark_model.109360_t, terminal, 2199, 2376
-recovered GeneMark_model.109360_t, internal, 147, 156
-recovered GeneMark_model.109360_t, internal, 374, 428
-recovered GeneMark_model.109360_t, internal, 1865, 1973
-recovered GeneMark_model.109360_t, internal, 2064, 2111
-recovered GeneMark_model.109360_t, internal, 2139, 2159

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2384
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support