-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1460

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41684.t1
Valid prediction for GlimmerHMM_glimmerT_62654-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62654-T1 1855-2054-terminal-1 is invalid.
Couldn't classify 1855, 2016
Sorry, prediction GeneMark_model.109359_t fails validation.
(TGC)	 AG	1855-2016	GT	AGG
-recovered GeneMark_model.109359_t, internal, 1855, 2016

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1460-snap.1-T1
add_exon() Sorry, snap_scaffold_1460-snap.1-T1 335-594-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2384
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support