-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_146

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_146-snap.2-T1
Couldn't classify 12472, 12480
Sorry, prediction GeneMark_model.106731_t fails validation.
(ATG)	 CC	9726-9766	GT	GAG
(TGG)	 AG	10149-10190	GT	AAG
(GGG)	 AG	10212-10235	GT	GGG
(GGG)	 AG	10257-10280	GT	GGG
(AGA)	 AG	12150-12164	GT	GGG
(GGT)	 AG	12209-12215	GT	GGG
(GGA)	 AG	12253-12269	GT	GGG
(GGG)	 AG	12305-12313	GT	GGG
(GGG)	 AG	12337-12345	GT	GGG
(AGA)	 AG	12367-12372	GT	AGG
(AGG)	 AG	12420-12440	GT	GGG
(AGG)	 AG	12472-12480	GT	GGG
-recovered GeneMark_model.106731_t, initial, 9726, 9766
-recovered GeneMark_model.106731_t, internal, 10149, 10190
-recovered GeneMark_model.106731_t, internal, 10212, 10235
-recovered GeneMark_model.106731_t, internal, 10257, 10280
-recovered GeneMark_model.106731_t, internal, 12150, 12164
-recovered GeneMark_model.106731_t, internal, 12209, 12215
-recovered GeneMark_model.106731_t, internal, 12253, 12269
-recovered GeneMark_model.106731_t, internal, 12305, 12313
-recovered GeneMark_model.106731_t, internal, 12337, 12345
-recovered GeneMark_model.106731_t, internal, 12367, 12372
-recovered GeneMark_model.106731_t, internal, 12420, 12440
-recovered GeneMark_model.106731_t, internal, 12472, 12480
Valid prediction for snap_scaffold_146-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_61386-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40828.t1
Valid prediction for GlimmerHMM_glimmerT_61388-T1
Couldn't classify 12213, 12255
Sorry, prediction GeneMark_model.106729_t fails validation.
(ATG)	 GC	7293-7300	GT	GGG
(AGA)	 AG	7346-7573	GT	TGG
(GGG)	 AG	7614-7622	GT	AGG
(ACC)	 AG	8953-9003	GT	CCG
(GTC)	 AG	9484-9687	GT	CTG
(GGG)	 AG	9937-10084	GT	ATG
(GTG)	 AG	12104-12124	GT	AGG
(GGC)	 AG	12150-12183	GT	GAG
(TCT)	 AG	12213-12255	GT	GAG
-recovered GeneMark_model.106729_t, initial, 7293, 7300
-recovered GeneMark_model.106729_t, internal, 7346, 7573
-recovered GeneMark_model.106729_t, internal, 7614, 7622
-recovered GeneMark_model.106729_t, internal, 8953, 9003
-recovered GeneMark_model.106729_t, internal, 9484, 9687
-recovered GeneMark_model.106729_t, internal, 9937, 10084
-recovered GeneMark_model.106729_t, internal, 12104, 12124
-recovered GeneMark_model.106729_t, internal, 12150, 12183
-recovered GeneMark_model.106729_t, internal, 12213, 12255
Valid prediction for Augustus_model.g40829.t1
Valid prediction for snap_scaffold_146-snap.3-T1
Valid prediction for snap_scaffold_146-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_61387-T1
Valid prediction for GeneMark_model.106730_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7155, rend_intergenic: 5554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12607
-exon list size: 65


building trellis

1.5    
3.0    
4.5    
6.0    
7.5    
9.0    
10.4    
11.9    
13.4    
14.9    
16.4    
17.9    
19.4    
20.9    
22.4    
23.9    
25.4    
26.9    
28.4    
29.9    
31.3    
32.8    
34.3    
35.8    
37.3    
38.8    
40.3    
41.8    
43.3    
44.8    
46.3    
47.8    
49.3    
50.7    
52.2    
53.7    
55.2    
56.7    
58.2    
59.7    
61.2    
62.7    
64.2    
65.7    
67.2    
68.7    
70.1    
71.6    
73.1    
74.6    
76.1    
77.6    
79.1    
80.6    
82.1    
83.6    
85.1    
86.6    
88.1    
89.6    
91.0    
92.5    
94.0    
95.5    
97.0    
98.5    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 7155, rend_intergenic: 5554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support