-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1459

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1866, 2005
Sorry, prediction GeneMark_model.109358_t fails validation.
(ATG)	 CT	1180-1829	GT	CTG
(CAC)	 AG	1866-2005	GT	GGG
-recovered GeneMark_model.109358_t, initial, 1180, 1829
-recovered GeneMark_model.109358_t, internal, 1866, 2005
Couldn't classify 410, 523
Couldn't classify 1906, 1992
Sorry, prediction snap_scaffold_1459-snap.1-T1 fails validation.
(GTT)	 AG	410-523	GT	CGG
(CAC)	 AG	1158-1809	GT	ATG
(CAC)	 AG	1906-1992	GT	TTG
-recovered snap_scaffold_1459-snap.1-T1, internal, 410, 523
-recovered snap_scaffold_1459-snap.1-T1, internal, 1158, 1809
-recovered snap_scaffold_1459-snap.1-T1, internal, 1906, 1992
Valid prediction for GlimmerHMM_glimmerT_62653-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2385
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support