-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1458

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2350, 2369
Sorry, prediction GeneMark_model.109357_t fails validation.
(ATG)	 AC	1162-1166	GT	CTG
(ACC)	 AG	1250-1508	GT	CTG
(GAT)	 AG	1790-1824	GT	ATG
(GGA)	 AG	1869-1919	GT	AGG
(GAA)	 AG	1948-1956	GT	AGG
(GGA)	 AG	1980-1988	GT	AGG
(GGA)	 AG	2012-2059	GT	CTG
(GGT)	 AG	2175-2189	GT	AGG
(AGA)	 AG	2225-2230	GT	GGG
(AGG)	 AG	2262-2291	GT	GGG
(AGA)	 AG	2317-2325	GT	GGG
(GGT)	 AG	2350-2369	GT	GGG
-recovered GeneMark_model.109357_t, initial, 1162, 1166
-recovered GeneMark_model.109357_t, internal, 1250, 1508
-recovered GeneMark_model.109357_t, internal, 1790, 1824
-recovered GeneMark_model.109357_t, internal, 1869, 1919
-recovered GeneMark_model.109357_t, internal, 1948, 1956
-recovered GeneMark_model.109357_t, internal, 1980, 1988
-recovered GeneMark_model.109357_t, internal, 2012, 2059
-recovered GeneMark_model.109357_t, internal, 2175, 2189
-recovered GeneMark_model.109357_t, internal, 2225, 2230
-recovered GeneMark_model.109357_t, internal, 2262, 2291
-recovered GeneMark_model.109357_t, internal, 2317, 2325
-recovered GeneMark_model.109357_t, internal, 2350, 2369
Couldn't classify 1192, 1521
Sorry, prediction snap_scaffold_1458-snap.1-T1 fails validation.
(GCC)	 AG	1192-1521	GT	CTG
-recovered snap_scaffold_1458-snap.1-T1, internal, 1192, 1521

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1808, 1945
Sorry, prediction GeneMark_model.109356_t fails validation.
(ATG)	 GG	1450-1457	GT	CTG
(ACA)	 AG	1507-1515	GT	GAG
(ACA)	 AG	1554-1580	GT	CAG
(AGA)	 AG	1622-1669	GT	AGG
(GGA)	 AG	1693-1707	GT	GAG
(GGG)	 AG	1742-1774	GT	AGG
(AGC)	 AG	1808-1945	GT	GAG
-recovered GeneMark_model.109356_t, initial, 1450, 1457
-recovered GeneMark_model.109356_t, internal, 1507, 1515
-recovered GeneMark_model.109356_t, internal, 1554, 1580
-recovered GeneMark_model.109356_t, internal, 1622, 1669
-recovered GeneMark_model.109356_t, internal, 1693, 1707
-recovered GeneMark_model.109356_t, internal, 1742, 1774
-recovered GeneMark_model.109356_t, internal, 1808, 1945

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2386
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support