-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1457

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 457, 878
Sorry, prediction snap_scaffold_1457-snap.2-T1 fails validation.
(GCC)	 AG	457-878	GT	GGG
(CCC)	 AG	2198-2259	GC	AAG
-recovered snap_scaffold_1457-snap.2-T1, terminal, 2198, 2259
-recovered snap_scaffold_1457-snap.2-T1, internal, 457, 878
-recovered snap_scaffold_1457-snap.2-T1, internal, 2198, 2259

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 166, 403
Couldn't classify 1817, 1951
Sorry, prediction snap_scaffold_1457-snap.1-T1 fails validation.
(TTT)	 AG	166-403	GT	CAG
(GTT)	 AG	1532-1588	GT	AGG
(CTG)	 AG	1817-1951	GT	AGG
-recovered snap_scaffold_1457-snap.1-T1, internal, 166, 403
-recovered snap_scaffold_1457-snap.1-T1, internal, 1532, 1588
-recovered snap_scaffold_1457-snap.1-T1, internal, 1817, 1951
Couldn't classify 1532, 1588
Couldn't classify 1817, 1951
Sorry, prediction Augustus_model.g41683.t1 fails validation.
(GTT)	 AG	1532-1588	GT	AGG
(CTG)	 AG	1817-1951	GT	AGG
-recovered Augustus_model.g41683.t1, internal, 1532, 1588
-recovered Augustus_model.g41683.t1, internal, 1817, 1951
Couldn't classify 186, 241
Couldn't classify 1817, 1951
Sorry, prediction GeneMark_model.109355_t fails validation.
(CAG)	 AG	186-241	GT	GGG
(GGA)	 AG	268-405	GT	GTG
(AGG)	 AG	1489-1588	GT	AGG
(CTG)	 AG	1817-1951	GT	AGG
-recovered GeneMark_model.109355_t, internal, 186, 241
-recovered GeneMark_model.109355_t, internal, 268, 405
-recovered GeneMark_model.109355_t, internal, 1489, 1588
-recovered GeneMark_model.109355_t, internal, 1817, 1951

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2222, rend_intergenic: 457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2387
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2222, rend_intergenic: 457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support