-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1455

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 780, 869
Couldn't classify 1848, 1966
Sorry, prediction Augustus_model.g41682.t1 fails validation.
(AAG)	 AG	780-869	GT	AGG
(AAG)	 AG	1000-1117	GT	ACG
(ATG)	 AG	1848-1966	GT	AGG
-recovered Augustus_model.g41682.t1, initial, 1848, 1966
-recovered Augustus_model.g41682.t1, terminal, 780, 869
-recovered Augustus_model.g41682.t1, internal, 780, 869
-recovered Augustus_model.g41682.t1, internal, 1000, 1117
-recovered Augustus_model.g41682.t1, internal, 1848, 1966
Couldn't classify 780, 914
Couldn't classify 2280, 2376
Sorry, prediction GeneMark_model.109354_t fails validation.
(AAG)	 AG	780-914	GT	GTG
(AAG)	 AG	1000-1117	GT	ACG
(ATG)	 AG	1848-2065	GT	GGG
(GGG)	 AG	2094-2222	GT	AGG
(AGG)	 AG	2247-2255	GT	AGG
(GAT)	 AG	2280-2376	GC	CCG
-recovered GeneMark_model.109354_t, initial, 1848, 2065
-recovered GeneMark_model.109354_t, internal, 780, 914
-recovered GeneMark_model.109354_t, internal, 1000, 1117
-recovered GeneMark_model.109354_t, internal, 1848, 2065
-recovered GeneMark_model.109354_t, internal, 2094, 2222
-recovered GeneMark_model.109354_t, internal, 2247, 2255
-recovered GeneMark_model.109354_t, internal, 2280, 2376
Couldn't classify 780, 897
Sorry, prediction GlimmerHMM_glimmerT_62652-T1 fails validation.
(AAG)	 AG	780-897	GT	ACG
(AAG)	 AG	1000-1089	GT	AGG
-recovered GlimmerHMM_glimmerT_62652-T1, terminal, 1000, 1089
-recovered GlimmerHMM_glimmerT_62652-T1, internal, 780, 897
-recovered GlimmerHMM_glimmerT_62652-T1, internal, 1000, 1089
Couldn't classify 780, 869
Couldn't classify 1994, 2149
Sorry, prediction snap_scaffold_1455-snap.1-T1 fails validation.
(AAG)	 AG	780-869	GT	AGG
(AAG)	 AG	1000-1132	GT	GTG
(CGG)	 AG	1994-2149	GT	AGG
-recovered snap_scaffold_1455-snap.1-T1, terminal, 780, 869
-recovered snap_scaffold_1455-snap.1-T1, internal, 780, 869
-recovered snap_scaffold_1455-snap.1-T1, internal, 1000, 1132
-recovered snap_scaffold_1455-snap.1-T1, internal, 1994, 2149

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2394
-exon list size: 18


building trellis

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35.0    
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45.0    
50.0    
55.0    
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95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support