-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1454

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1454-snap.1-T1
Couldn't classify 76, 126
Sorry, prediction Augustus_model.g41681.t1 fails validation.
(GAC)	 AG	76-126	GT	AGG
(ACG)	 AG	303-348	AT	GAA
-recovered Augustus_model.g41681.t1, terminal, 303, 348
-recovered Augustus_model.g41681.t1, internal, 76, 126
Couldn't classify 258, 267
Couldn't classify 1413, 1483
Sorry, prediction GeneMark_model.109353_t fails validation.
(GGG)	 AG	258-267	GT	TGG
(ACG)	 AG	303-334	GT	AAG
(AGA)	 AG	450-539	GT	GAG
(AAA)	 AG	671-686	GT	TAG
(CTC)	 AG	727-740	GT	AGG
(AGA)	 AG	927-977	GT	GGG
(GGG)	 AG	999-1007	GT	TTG
(GGG)	 AG	1040-1090	GT	GGG
(AGA)	 AG	1115-1123	GT	AAG
(AGA)	 AG	1145-1195	GT	CAG
(AGC)	 AG	1220-1225	GT	AAG
(AGA)	 AG	1250-1326	GT	AGG
(GAT)	 AG	1413-1483	GT	CCG
-recovered GeneMark_model.109353_t, terminal, 303, 334
-recovered GeneMark_model.109353_t, terminal, 1220, 1225
-recovered GeneMark_model.109353_t, internal, 258, 267
-recovered GeneMark_model.109353_t, internal, 303, 334
-recovered GeneMark_model.109353_t, internal, 450, 539
-recovered GeneMark_model.109353_t, internal, 671, 686
-recovered GeneMark_model.109353_t, internal, 727, 740
-recovered GeneMark_model.109353_t, internal, 927, 977
-recovered GeneMark_model.109353_t, internal, 999, 1007
-recovered GeneMark_model.109353_t, internal, 1040, 1090
-recovered GeneMark_model.109353_t, internal, 1115, 1123
-recovered GeneMark_model.109353_t, internal, 1145, 1195
-recovered GeneMark_model.109353_t, internal, 1220, 1225
-recovered GeneMark_model.109353_t, internal, 1250, 1326
-recovered GeneMark_model.109353_t, internal, 1413, 1483

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2395
-exon list size: 39


building trellis

2.4    
4.9    
7.3    
9.8    
12.2    
14.6    
17.1    
19.5    
22.0    
24.4    
26.8    
29.3    
31.7    
34.1    
36.6    
39.0    
41.5    
43.9    
46.3    
48.8    
51.2    
53.7    
56.1    
58.5    
61.0    
63.4    
65.9    
68.3    
70.7    
73.2    
75.6    
78.0    
80.5    
82.9    
85.4    
87.8    
90.2    
92.7    
95.1    
97.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support