-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1453

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62651-T1
Couldn't classify 223, 494
Sorry, prediction snap_scaffold_1453-snap.1-T1 fails validation.
(GAC)	 AG	223-494	GT	TGG
(GCC)	 AG	1451-1537	GT	AGG
(AAC)	 AG	1782-1874	GT	ACG
(TTC)	 AG	2005-2044	GT	AAG
(GAG)	 AG	2229-2374	CC	AGC
-recovered snap_scaffold_1453-snap.1-T1, terminal, 2229, 2374
-recovered snap_scaffold_1453-snap.1-T1, internal, 223, 494
-recovered snap_scaffold_1453-snap.1-T1, internal, 1451, 1537
-recovered snap_scaffold_1453-snap.1-T1, internal, 1782, 1874
-recovered snap_scaffold_1453-snap.1-T1, internal, 2005, 2044
Couldn't classify 282, 494
Sorry, prediction Augustus_model.g41680.t1 fails validation.
(TCA)	 AG	282-494	GT	TGG
(GCC)	 AG	1451-1537	GT	AGG
(AAC)	 AG	1782-1879	GT	AGG
(CAT)	 AG	2189-2252	CT	AGC
-recovered Augustus_model.g41680.t1, terminal, 2189, 2252
-recovered Augustus_model.g41680.t1, internal, 282, 494
-recovered Augustus_model.g41680.t1, internal, 1451, 1537
-recovered Augustus_model.g41680.t1, internal, 1782, 1879
Couldn't classify 2248, 2373
Sorry, prediction GeneMark_model.109352_t fails validation.
(ATG)	 AG	1356-1382	GT	GAG
(GCC)	 AG	1451-1537	GT	AGG
(AAC)	 AG	1782-1951	GT	CCG
(AGT)	 AG	2248-2373	GC	TAG
-recovered GeneMark_model.109352_t, initial, 1356, 1382
-recovered GeneMark_model.109352_t, internal, 1356, 1382
-recovered GeneMark_model.109352_t, internal, 1451, 1537
-recovered GeneMark_model.109352_t, internal, 1782, 1951
-recovered GeneMark_model.109352_t, internal, 2248, 2373

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1905, 1985
Sorry, prediction GeneMark_model.109351_t fails validation.
(ATG)	 AC	1541-1605	GT	GAG
(AGA)	 AG	1734-1883	GT	ATG
(GGT)	 AG	1905-1985	GT	GCG
-recovered GeneMark_model.109351_t, initial, 1541, 1605
-recovered GeneMark_model.109351_t, internal, 1734, 1883
-recovered GeneMark_model.109351_t, internal, 1905, 1985
Couldn't classify 416, 528
Couldn't classify 1900, 2038
Sorry, prediction snap_scaffold_1453-snap.2-T1 fails validation.
(GGA)	 AG	416-528	GT	GGG
(ACC)	 AG	1900-2038	GT	ACG
-recovered snap_scaffold_1453-snap.2-T1, internal, 416, 528
-recovered snap_scaffold_1453-snap.2-T1, internal, 1900, 2038

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2374, rend_intergenic: 358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2395
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2374, rend_intergenic: 358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support