-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1450

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2227, 2241
Sorry, prediction GeneMark_model.109349_t fails validation.
(ATG)	 TC	2007-2013	GT	AGG
(AGC)	 AG	2033-2162	GT	GAG
(AGA)	 AG	2185-2199	GT	AGG
(AAG)	 AG	2227-2241	GT	GAG
-recovered GeneMark_model.109349_t, initial, 2007, 2013
-recovered GeneMark_model.109349_t, internal, 2033, 2162
-recovered GeneMark_model.109349_t, internal, 2185, 2199
-recovered GeneMark_model.109349_t, internal, 2227, 2241
Valid prediction for GeneMark_model.109347_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 418, 726
Sorry, prediction snap_scaffold_1450-snap.1-T1 fails validation.
(CCC)	 AG	418-726	GT	GGG
(GTG)	 AG	2156-2169	CT	GAC
-recovered snap_scaffold_1450-snap.1-T1, terminal, 2156, 2169
-recovered snap_scaffold_1450-snap.1-T1, internal, 418, 726
Couldn't classify 418, 726
Sorry, prediction Augustus_model.g41679.t1 fails validation.
(CCC)	 AG	418-726	GT	GGG
(GTG)	 AG	2156-2169	CT	GAC
-recovered Augustus_model.g41679.t1, terminal, 2156, 2169
-recovered Augustus_model.g41679.t1, internal, 418, 726
Valid prediction for GlimmerHMM_glimmerT_62649-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62649-T1 418-773-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2402
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support