-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1448

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 50, 191
Couldn't classify 2006, 2157
Sorry, prediction snap_scaffold_1448-snap.1-T1 fails validation.
(ATC)	 AG	50-191	GT	AGG
(AAC)	 AG	1566-1609	GT	TGG
(GTT)	 AG	1621-1863	GT	TAG
(GGC)	 AG	2006-2157	GT	TGG
-recovered snap_scaffold_1448-snap.1-T1, internal, 50, 191
-recovered snap_scaffold_1448-snap.1-T1, internal, 1566, 1609
-recovered snap_scaffold_1448-snap.1-T1, internal, 1621, 1863
-recovered snap_scaffold_1448-snap.1-T1, internal, 2006, 2157
Couldn't classify 17, 191
Couldn't classify 2349, 2357
Sorry, prediction GeneMark_model.109346_t fails validation.
(GAG)	 AG	17-191	GT	AGG
(AGC)	 AG	1007-1016	GT	AGG
(AGA)	 AG	1662-1895	GT	AAG
(CCC)	 AG	2038-2157	GT	TGG
(TGT)	 AG	2279-2287	GT	GAG
(AGA)	 AG	2349-2357	GT	GAG
-recovered GeneMark_model.109346_t, internal, 17, 191
-recovered GeneMark_model.109346_t, internal, 1007, 1016
-recovered GeneMark_model.109346_t, internal, 1662, 1895
-recovered GeneMark_model.109346_t, internal, 2038, 2157
-recovered GeneMark_model.109346_t, internal, 2279, 2287
-recovered GeneMark_model.109346_t, internal, 2349, 2357
Couldn't classify 1, 191
Sorry, prediction Augustus_model.g41678.t1 fails validation.
(CCT)	 AG	1-191	GT	AGG
(AGC)	 AG	1007-1020	CA	GAC
-recovered Augustus_model.g41678.t1, terminal, 1007, 1020
Valid prediction for GlimmerHMM_glimmerT_62648-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2406
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support