-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1447

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 49, 57
Couldn't classify 1081, 1218
Sorry, prediction GeneMark_model.109345_t fails validation.
(GGA)	 AG	49-57	GT	GAG
(AGA)	 AG	78-98	GT	GAG
(AGT)	 AG	121-162	GT	GAG
(AAG)	 AG	187-202	GT	CTG
(GGG)	 AG	1027-1055	GT	GGG
(GGA)	 AG	1081-1218	GT	CAG
-recovered GeneMark_model.109345_t, internal, 49, 57
-recovered GeneMark_model.109345_t, internal, 78, 98
-recovered GeneMark_model.109345_t, internal, 121, 162
-recovered GeneMark_model.109345_t, internal, 187, 202
-recovered GeneMark_model.109345_t, internal, 1027, 1055
-recovered GeneMark_model.109345_t, internal, 1081, 1218

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1137, 1283
Sorry, prediction snap_scaffold_1447-snap.1-T1 fails validation.
(ATG)	 GA	525-575	GT	TGG
(AAG)	 AG	1137-1283	GT	GCG
-recovered snap_scaffold_1447-snap.1-T1, initial, 525, 575
-recovered snap_scaffold_1447-snap.1-T1, internal, 1137, 1283

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2408
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support