-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1444

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1444-snap.1-T1
Valid prediction for Augustus_model.g41677.t1
Valid prediction for GlimmerHMM_glimmerT_62646-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62646-T1 255-420-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62647-T1
Couldn't classify 1057, 1186
Couldn't classify 1226, 1457
Sorry, prediction GeneMark_model.109344_t fails validation.
(GCC)	 AG	1057-1186	GT	GAG
(TCA)	 AG	1226-1457	GT	ATG
add_exon() Sorry, GeneMark_model.109344_t 1057-1186-terminal-3 is invalid.
-recovered GeneMark_model.109344_t, terminal, 1057, 1186
-recovered GeneMark_model.109344_t, internal, 1057, 1186
-recovered GeneMark_model.109344_t, internal, 1226, 1457

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2412
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support