-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1440

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 12, 34
Sorry, prediction GeneMark_model.109340_t fails validation.
(GGA)	 AG	12-34	GT	GGG
(AAG)	 AG	59-88	GT	GGG
(GGA)	 AG	144-152	GT	GGG
(GTG)	 AG	176-295	GT	AGG
(AAA)	 AG	1154-1219	GT	GAG
(AGG)	 AG	1304-1378	GT	AGG
(TCG)	 AG	1400-1420	GT	GTG
(AGA)	 AG	1779-1881	GT	GAG
-recovered GeneMark_model.109340_t, terminal, 1779, 1881
-recovered GeneMark_model.109340_t, internal, 12, 34
-recovered GeneMark_model.109340_t, internal, 59, 88
-recovered GeneMark_model.109340_t, internal, 144, 152
-recovered GeneMark_model.109340_t, internal, 176, 295
-recovered GeneMark_model.109340_t, internal, 1154, 1219
-recovered GeneMark_model.109340_t, internal, 1304, 1378
-recovered GeneMark_model.109340_t, internal, 1400, 1420
-recovered GeneMark_model.109340_t, internal, 1779, 1881

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109341_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2416
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support