-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1439

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109338_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 47, 197
Couldn't classify 2209, 2400
Sorry, prediction snap_scaffold_1439-snap.1-T1 fails validation.
(GAG)	 AG	47-197	GT	AGG
(CTG)	 AG	1772-1928	GT	TGG
(AGC)	 AG	2209-2400	GT	GGG
-recovered snap_scaffold_1439-snap.1-T1, internal, 47, 197
-recovered snap_scaffold_1439-snap.1-T1, internal, 1772, 1928
-recovered snap_scaffold_1439-snap.1-T1, internal, 2209, 2400
Couldn't classify 47, 197
Sorry, prediction GlimmerHMM_glimmerT_62645-T1 fails validation.
(GAG)	 AG	47-197	GT	AGG
(CTG)	 AG	1772-1944	GT	ACG
(AGC)	 AG	2209-2230	CA	GAC
-recovered GlimmerHMM_glimmerT_62645-T1, terminal, 2209, 2230
-recovered GlimmerHMM_glimmerT_62645-T1, internal, 47, 197
-recovered GlimmerHMM_glimmerT_62645-T1, internal, 1772, 1944
Couldn't classify 47, 197
Sorry, prediction GeneMark_model.109339_t fails validation.
(GAG)	 AG	47-197	GT	AGG
(CCC)	 AG	463-474	TG	GAT
-recovered GeneMark_model.109339_t, terminal, 463, 474
-recovered GeneMark_model.109339_t, internal, 47, 197
Couldn't classify 47, 197
Couldn't classify 2209, 2400
Sorry, prediction Augustus_model.g41676.t1 fails validation.
(GAG)	 AG	47-197	GT	AGG
(CTG)	 AG	1772-1928	GT	TGG
(AGC)	 AG	2209-2400	GT	GGG
-recovered Augustus_model.g41676.t1, internal, 47, 197
-recovered Augustus_model.g41676.t1, internal, 1772, 1928
-recovered Augustus_model.g41676.t1, internal, 2209, 2400
Couldn't classify 2209, 2390
Sorry, prediction GeneMark_model.109337_t fails validation.
(ATG)	 CT	1466-1471	GT	CTG
(CTG)	 AG	1772-1928	GT	TGG
(AGC)	 AG	2209-2390	GC	ACG
-recovered GeneMark_model.109337_t, initial, 1466, 1471
-recovered GeneMark_model.109337_t, internal, 1772, 1928
-recovered GeneMark_model.109337_t, internal, 2209, 2390

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2418
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support