-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1437

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 625, 833
Sorry, prediction GeneMark_model.109335_t fails validation.
(GGG)	 AG	625-833	GT	AGG
(CAG)	 AG	1056-1092	GT	GGG
(AGA)	 AG	1142-1168	GT	GAG
(AGA)	 AG	1198-1248	GT	AGG
(GGA)	 AG	1272-1308	GA	GAG
-recovered GeneMark_model.109335_t, terminal, 1272, 1308
-recovered GeneMark_model.109335_t, internal, 625, 833
-recovered GeneMark_model.109335_t, internal, 1056, 1092
-recovered GeneMark_model.109335_t, internal, 1142, 1168
-recovered GeneMark_model.109335_t, internal, 1198, 1248
Couldn't classify 2059, 2261
Sorry, prediction snap_scaffold_1437-snap.2-T1 fails validation.
(ATG)	 GA	572-833	GT	AGG
(CTC)	 AG	1951-2008	GT	AAG
(GGA)	 AG	2059-2261	GT	GGG
-recovered snap_scaffold_1437-snap.2-T1, initial, 572, 833
-recovered snap_scaffold_1437-snap.2-T1, internal, 1951, 2008
-recovered snap_scaffold_1437-snap.2-T1, internal, 2059, 2261

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1437-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_62644-T1
Couldn't classify 180, 267
Sorry, prediction GeneMark_model.109336_t fails validation.
(GAG)	 AG	180-267	GT	AGG
(CAG)	 AG	398-508	GT	GAG
(AGA)	 AG	609-641	GT	GAG
(AGA)	 AG	667-687	GT	GAG
(GAA)	 AG	709-753	GC	GAG
(AAA)	 AG	783-962	GT	AGG
(GCG)	 AG	986-1082	AG	AGA
-recovered GeneMark_model.109336_t, terminal, 986, 1082
-recovered GeneMark_model.109336_t, internal, 180, 267
-recovered GeneMark_model.109336_t, internal, 398, 508
-recovered GeneMark_model.109336_t, internal, 609, 641
-recovered GeneMark_model.109336_t, internal, 667, 687
-recovered GeneMark_model.109336_t, internal, 709, 753
-recovered GeneMark_model.109336_t, internal, 783, 962

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1637, rend_intergenic: 572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2421
-exon list size: 36


building trellis

2.6    
5.3    
7.9    
10.5    
13.2    
15.8    
18.4    
21.1    
23.7    
26.3    
28.9    
31.6    
34.2    
36.8    
39.5    
42.1    
44.7    
47.4    
50.0    
52.6    
55.3    
57.9    
60.5    
63.2    
65.8    
68.4    
71.1    
73.7    
76.3    
78.9    
81.6    
84.2    
86.8    
89.5    
92.1    
94.7    
97.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1637, rend_intergenic: 572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support